RNA id: TU155025


Basic Information

Item Value
RNA id TU155025
length 677
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G123637
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16980831 ~ 16982646 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacagagccaaaatgatgacaattgtgtcactgtccaaatatttaggGACCTAACTACAATACACTACATCAATTTTAACACCTGCCCATTGAGTTTTACAGATTGGTGGTGTTCTTGTAGTAATCAGAACAGGGACTAAAGGCAATGACTTAAAGATTACATATTGCTTGgtcttcatttatttctgctcGGTTGCCCTATTGCACTGGATTAAGTGCATGGTCTCTTAAGGTTTTGAATGACTTTGTCGATACCATAAGAGTCTATGTACCCTAGAAACATGTTAAGAAAGGTAACATTAATAACTTACTCATCTAAACTATGTAAATTCTGATGACTCATTTTCCAAACAACACCCCAAACCTCATGCCCCTGACTCTCTTCAATAGTGGCCACACCTCCATGccaatgattgtttttattcccaCCACATGTCCCAAAATTTAGCATATAATcctgtgcTGTACCCTGCCTGTGCAGTGCAGTTGTGCCGACGGGTTTTTCAGACGCAGTCTTTCTTTCAGCAGGTTACTACCGTAAGCAAAGTAGAAAAAGTGTCCCTCGTTTGACATGACAGAGTTCAAAGCACGTTTACAGCATTGGCCAGACTTAGCATCTATAACTGAAACGCAGTCGGTTTCCAATGCAATATGAATTCCTGTGGCTTGCCTGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154999 lncRNA downstream 20724 16958162 ~ 16960107 (-) False AMCG00002503
TU154878 lncRNA downstream 325968 16653499 ~ 16654863 (-) True G123527
TU154874 lncRNA downstream 329377 16648407 ~ 16651454 (-) True G123524
TU154834 lncRNA downstream 497780 16481568 ~ 16483051 (-) True G123489
TU154833 lncRNA downstream 500538 16480029 ~ 16480293 (-) True G123488
TU155030 lncRNA upstream 12483 16995129 ~ 17050056 (-) True G123642
TU155036 lncRNA upstream 92666 17075312 ~ 17075549 (-) True G123646
TU155101 lncRNA upstream 251724 17234370 ~ 17238544 (-) True G123705
TU155202 lncRNA upstream 677421 17660067 ~ 17675110 (-) True G123788
TU155213 lncRNA upstream 707392 17690038 ~ 17696504 (-) False AMCG00002524
AMCG00002503 mRNA downstream 6530 16958201 ~ 16974301 (-) True AMCG00002503
AMCG00002492 mRNA downstream 132715 16847424 ~ 16848116 (-) True AMCG00002492
AMCG00002490 mRNA downstream 149560 16824229 ~ 16831271 (-) True AMCG00002490
AMCG00002491 mRNA downstream 167559 16792556 ~ 16813272 (-) True AMCG00002491
AMCG00002486 mRNA downstream 227335 16752548 ~ 16753496 (-) True AMCG00002486
AMCG00002505 mRNA upstream 38773 17021419 ~ 17052806 (-) True AMCG00002505
AMCG00002504 mRNA upstream 80761 17063407 ~ 17071925 (-) True AMCG00002504
AMCG00002508 mRNA upstream 97858 17080504 ~ 17090314 (-) True AMCG00002508
AMCG00002509 mRNA upstream 110260 17092906 ~ 17097083 (-) True AMCG00002509
AMCG00002510 mRNA upstream 154530 17137176 ~ 17158023 (-) True AMCG00002510
TU154950 other downstream 141109 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 2034520 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 3326595 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 3951425 13028197 ~ 13029406 (-) False G122862
TU155250 other upstream 939806 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 6103348 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 6199275 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 7278919 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 7309141 24291787 ~ 24339566 (-) True G124848

Expression Profile