RNA id: TU155030


Basic Information

Item Value
RNA id TU155030
length 1859
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G123642
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16995129 ~ 17050056 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagagagCTGTCTGAAAGGAAACATCTTaacagaagaggaagagaagagtTTCAGCCATGAGGAGCGTCTGCGGTTCAACTGAAAAGCGGCTCCCTGTCCCACGGAGATGATGCGGGTGATCTAGCAACAGGCCTGTAGGACTTCCTGTCCTGAAGGGGTCTCTTCACACGCCTTGGGGGGGCACTAAAGCATCTTCATTTCTGGacttaaaaactacaaaacaaacaaacaatctggAACAATCTATTGACTGTAGCAGGCAGGATCTTAAGACCGCTTTTCTGCCAAGTCATTGTTTTGTGAATTGTTTATAAAACCCGACTGCATTTCAGTGGTAAGTATTAGGCAGCTGACATTGTGGTGTCCTTACAAGGCCTAAAAACAAATTGCACCCTTAATTCGCGGGCAATAAGATACAGGAACTCTGAAGCCATTGGTCATTTTACACCCTGAGTTTCTTTTGAAGTCCAGGACAAAagtaaaagtgtgtattttggggttaattttctgtatttcctcACTGCAGGTGATGGACCAATGAACTGCTGGTGTATTCTGCACAGCTGCAGTGCACCGTGGGATATGGTACGATTTGTACCTTGTTATTTACCTAACAGAAAGTTAAAGAATTGTAAGCAGGCAGTATGTTAAAACAACTCCTGTCCTATCTTCTGCTGTTCTGTGATTGTATTTCAATGAGAGCGTTACACATTATTGTCATTTGTATCACACTATTGCTGGGTCTTGTAGACTTTCATAATTCGGTTTTGGCATCTGCTATTGTTGCTTTGCTTTGTATATGCTATTGAGTAGAGATGTGATATCCCAACAGCAAATTGTAGGTTTTAATCTAGTTGAACATTAGGGGTGTAAATGTTACTGTTCATAAAGCCTTGTCTTCTATGCATGCCACCAAGCAAAATAGTTCTGTTTTTAAGGGTGTCTGAGTTTATGTTAATGAAAACTACAgtaatattaaatgtgtaacGCAGATATTTCAACCATTTTAGCAGAGAAACGGTTAACTTTCTGTATCACGTTCAGCACCAGTCTTTGGACACTTTCCCTTACTGGTGCTTTATGTTCTCTTCGCTGTGGTTTCATTCTGATCACTGACACAGTCAGCCTGTTTCCCGTTTTACACATCCTGGAGggatttttcttcctctctgcaTTTCTATGAAGTAGCTTGGTCACGCTTTTTTGCACTGCGTTCTGTGAATTCAGAtgtgaatttaaatgttatCAGAGATGAATGctaaatgtaatagtttttaATTGCTGGCTCGCCTGCGGCCTACTAGCTTTTAGCCTCAGACTTGAGGTACAGCCcatttatgtttacatttatatttggcAGCCCTGTGCAGCATATAAGTTGTATAGTCTATATTTCCTGGTGTTTCAGTTGCTGGCAACtatttctctgtgtgtatgtatatagatgtatgaatacatatgaaaataaatacatctatccCATCCTCATCATCAGTCTATATCgacccactgctggatgaaggcctccccaagatttctacacttgttttgatctattgcttctcttttccatgtcacacctgcaaagttcaTGATTTAGTCTTCTCATCTTTAATGTGGTcactttcttgttgttttttatctCTTGGGATTTGTTCtataacttcctttgtccatctttgatctcttcttgcaatgtgtccagcccactgccattttaacattttcactccttcaattatgtcaaatattttggtttgttctccaatcaatttataacttttttgaaatgtgtttttctggattttgttgttattctgtctctcactgttaaaatacacctaccattaaaattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155025 lncRNA downstream 12483 16980831 ~ 16982646 (-) True G123637
TU154999 lncRNA downstream 35022 16958162 ~ 16960107 (-) False AMCG00002503
TU154878 lncRNA downstream 340266 16653499 ~ 16654863 (-) True G123527
TU154874 lncRNA downstream 343675 16648407 ~ 16651454 (-) True G123524
TU154834 lncRNA downstream 512078 16481568 ~ 16483051 (-) True G123489
TU155036 lncRNA upstream 25256 17075312 ~ 17075549 (-) True G123646
TU155101 lncRNA upstream 184314 17234370 ~ 17238544 (-) True G123705
TU155202 lncRNA upstream 610011 17660067 ~ 17675110 (-) True G123788
TU155213 lncRNA upstream 639982 17690038 ~ 17696504 (-) False AMCG00002524
TU155242 lncRNA upstream 761462 17811518 ~ 17815466 (-) True G123824
AMCG00002503 mRNA downstream 20828 16958201 ~ 16974301 (-) True AMCG00002503
AMCG00002492 mRNA downstream 147013 16847424 ~ 16848116 (-) True AMCG00002492
AMCG00002490 mRNA downstream 163858 16824229 ~ 16831271 (-) True AMCG00002490
AMCG00002491 mRNA downstream 181857 16792556 ~ 16813272 (-) True AMCG00002491
AMCG00002486 mRNA downstream 241633 16752548 ~ 16753496 (-) True AMCG00002486
AMCG00002504 mRNA upstream 13351 17063407 ~ 17071925 (-) True AMCG00002504
AMCG00002508 mRNA upstream 30448 17080504 ~ 17090314 (-) True AMCG00002508
AMCG00002509 mRNA upstream 42850 17092906 ~ 17097083 (-) True AMCG00002509
AMCG00002510 mRNA upstream 87120 17137176 ~ 17158023 (-) True AMCG00002510
AMCG00002514 mRNA upstream 133345 17183401 ~ 17185908 (-) True AMCG00002514
TU154950 other downstream 155407 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 2048818 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 3340893 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 3965723 13028197 ~ 13029406 (-) False G122862
TU155250 other upstream 872396 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 6035938 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 6131865 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 7211509 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 7241731 24291787 ~ 24339566 (-) True G124848

Expression Profile