RNA id: TU155050


Basic Information

Item Value
RNA id TU155050
length 3978
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G123659
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17137413 ~ 17141435 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTctgaatttattaaaataaacatgtcatgccatgattatacatttctttgggtgaaataaattatgagGGAAGAAACAATAACAGGACAGACAATGAAACCAGTTTGAGGCCAAATGAATCCGCTCTGTCAGAAACATGCAGAGTCAGCTCAAAAGTAATTTCCAATTACGGACACTGAAATTGCAAGTTTTCAAACAGCAGCTGAAGAACAATGATTCAGAGCTCCGTGAAGGTTTGGGTGTGTCTCAAGCACAATGGGCCACACCCACCCTGGGAGGGAATATGATGAGGCTGTTTCTTCTTCCCCACGACTGCATGAACAAGCTTCCCTGAGATCTGAGCCGACCAGAGTAAAAAACACCAGCTGGACCAGTTTAAGGGCAAGAACATAAGCTTTGACCGATGAATGAACAGGATGGTGGAATCTCAAATACAACTGAAATTCAACAGCGattccttaatttttttttgtgattaaaaaaaaaaaaaaaaaagtatccaCGTAGAACCATTCTATCAACTTCTAACACCTCCAACagtattaatttcatttttggcAAATGTACACTTTTTTCAGATCGCTTGACATTTGGAGATACCGCCTTAAACATGTAAACTTTGTCGTCTCTACATACACaaggaaagaagagaaaacCACATCACATATCATATCAATCTACAGGCGAAATACATTCACATTTCCGACATCATTTGACTACACTGTCATCCTGCACTGACTGTAAACATTTCCAACATTTGTAAGTTGGATTCAAGCATGGCAATCGGACAACAATACACATAACTACCCCCCACCacctaaaacaaagaaaaacacaccaaCATGTCGTAAAAAATGCATAATCtatatcaatcaatccattttaattcagtatagCCCCTATTGCACAGTAGCCACAGCATGTCCATTGGCCTATATGGATCCACTCCTGGATGAGTCTCCCCACGATGTTCCCACTTCTGTTAATAGCTTCCCTTCTACCTTCAGcatcttcactctttcaatgacgTCACATTTTTTGGCTTGATCTCCTCACGTTATTCCAGGTaaacatctttccatgctcctttgcgTCGTCTGCAATCTCTAACATCTTTGCATTAAacgaccaggtttcacagccgtAAGTGAGCACTGCTAGTATGCatggatcaaatacttttctcttcaggcaagtgggtagatccTTTCAACAGCGTCCGGTTTCTTCCAAAGCACTCCATCCGATTTTCACGATaaatttcttccataatatctctaTCTGTGCGGATTTTTTGTCCAAGTTAGACTTAACTTAGGTATCTATTGATCTACTGGCTTggtttgaatataaatgttttcccATACTGTAGAATATTTTGGATAATAAGTGactacattttctgtttgtttgtactCAATGTCCTTTGTAGGGCAATCTGgagtttgattttattgtaaattCTGCTTGGATTGCATACCTGGGTTCTccataaagcaataaaaaaagaaaagcagtataAATCTGCATTCAACTGAAAACCCAGCCGTTCATCCCAGCGTGCTGCAGTTGACATCTTGCGTACCTATGTGACAACACACGATTGTTGAGCAGCCATTAACACTCCTCTCAGTCCTTTAAAAGGTTGTCACTCTCTCAACGCTCATTGGCATTGAGCTGCATCCAGTTaaacaggaaaaggaaataaTTCTGACACCTAGTGCTTCAACCAAATGATACGATAACAGCAATTTTACTTTCTATCACTTTCTGAAAGGccctgaatattattattaatgtggaTCAGCTTTATCAGAACATGTTTAAATACTAAACCATTATTAAAACTTTTCAAATTTCACCTACTgcacaaccaaaaaaaataaaaataaaaatcagaaagCGTGCTGGGCATGTAGACGAGACGAGAGTCATAAATGTTGGCTGACCCAGAAGGTGATGGAGACCAGACGTCTCTCCAGAAGTGCTTCTGCAATGAGCAGTCAGAGGGGCTTCAGTGTAGGAAGGTTACTTTGCTGTTAActcacattttcaaatgccGAGACTGCCACCTGCGAGTGGCATCTCAAAGCCAGCCTGCCTCCGCTGAGTCTAATCCCCATAATTGACAGCCGGGGATGCCAGCTCCCTCCATACCTTCAGTCAATGTGCTAGTGTgcctccttccttccctcccgGGGCATCTTGGTAACTGAGCAGCAAATCCGCACAGCCTGAACACACAGTCAAGCAGCGACTGACCCAGTGTCCTCAGGGATCCTTTTACTTCCATCAAAACAGCtctcataattattattattattattccacctCATATGAGATCCCAGCTTGCCCACTGCAGCACCCTAACCACATTGAGTCAGTGGTGGCATCATTTGTAATCTTGTATTGTTCAATTTTCAGCCCAGGATCCTCGAGAAGGAGTTactgaattacatttcagaacgcatgcttttatttaaacagttttgtgtTAATGGTACCCAAGCCTTGCTGTCTCTTGTggaagaaatgcaaatattacaCTCCATTACACTGCACATTAAAAAGGCCCAGACAGGCTAGAGCCAGGGTACCGCACCAAGTCAAGTTCTCTTCAGGCAGAATTGTCGCTTTTACATTCACTTCAAACATTCAGTTAAAGTAATTTCCTGGTGGATATAGATTTCTTTATGTGCCTAATCACTGTAATAAGACCTCATGTAATGGTATGCCATTCAAATCCAATTCTAAAGCgcacagatgaaaaaaaaactcaaacaaagAAGCAAAGTAAGAGCTGAGAAACATCACAAGATAAACGACAGACTTTCTTTTGAAGTATGTTTCTGAGAGCACCGACCTCAAATTGGAAAAACTCGAATTCTTCTTACAAAAACATCCGCTATCGTGGCAGAAGATTTCAATCAATGATTTTGCtcttcatatttataaatatatttatccaATACAGTAAGTGTCATAATGTACAAGTGCATAGAAATCAAGTAAGTACCTTTTTGACAGGTTGGCATGGGGCTTAGTAAAGCGTACTTGCATTATAACCAAGCAAAtgataacatttatataaatatagattaatATAGAATTTTACATAAGAATAATAAGGAATCCAGCATCAaaggtattcaaataaaaataagtcaaccaagcttttttcttttcattaacaGACAGTTTGTGCCCAACGCAGGATTGGTGGGTTGTGCAAGTCTGGGGTTTACGCTTCAATGAAAAGCAAGCATGCATCGCAAAAAAAATTCGCACTGAATTCAAGTGACTCATAAAAGCCCTTATAAGCCCTAACACAGGGACACATGAGATtagcagaaagagagaaagaaagaataacaaaCATGATAATACAATTAAGTGCATTAAGCCCAAAGACAAGACATGATTCAGAAAGCTGAGAAATTCAGCCTgaacgcgtgtgtgtgtgagtcagtcaCTGTGTTTCATACCTCTGTGTAACCCTTCAGCTACCGTGGTGACAAAAACATGACGTTACCGGATGAGGGCAGGGCAAGATGGCAGATGGTTTGGGTTTATAGACACAAGTGTAGGATTGTGAGGCAGGTGTGTCCAGAGATCGATCgatcttttttccttttcccttccagttttttttcttttttttggtttgagaACATGGCCACACAGTCTTCCCCAGCGATTAAAATGTCCCCCAACAGTGGCATTTTACAAAACTTACAGGAATGATCTTTGGTGGCCTAAACCTAACCAGGGCCACTCCTTGCCTGAAAGGGTGCCATGCATCCTGAGAATGCTCTGCTTTGGCAGATACCTCACTGTAGCTTGGATACCTTGACTGGCACGGTAGTGTTGAAGTCCAGAAAGAAAGGTCCCTCTTGATTGGGGAGGAAAGTGGTGGGAATGATGTTGTAAACTCCGGCAGGTATGTAGTCCGACTCCATGTAGCAAAAGCCACAcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155013 lncRNA upstream 151509 16980793 ~ 16985904 (+) False AMCG00002496
TU154926 lncRNA upstream 344614 16792100 ~ 16792799 (+) True G123568
TU154877 lncRNA upstream 482529 16653499 ~ 16654884 (+) True G123526
TU154876 lncRNA upstream 485449 16651542 ~ 16651964 (+) True G123525
TU154813 lncRNA upstream 647461 16485826 ~ 16489952 (+) True G123468
TU155212 lncRNA downstream 554425 17695860 ~ 17760195 (+) True G123797
TU155224 lncRNA downstream 785264 17926699 ~ 17940633 (+) True G123808
TU155257 lncRNA downstream 909577 18051012 ~ 18052338 (+) True G123833
TU155357 lncRNA downstream 1363453 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA downstream 1365469 18506904 ~ 18509774 (+) False G123916
AMCG00002506 mRNA upstream 893 17107399 ~ 17136520 (+) True AMCG00002506
AMCG00002507 mRNA upstream 35294 17095736 ~ 17102119 (+) True AMCG00002507
AMCG00002501 mRNA upstream 121167 17003048 ~ 17016246 (+) True AMCG00002501
AMCG00002502 mRNA upstream 144458 16987102 ~ 16992955 (+) True AMCG00002502
AMCG00002496 mRNA upstream 151507 16976288 ~ 16985906 (+) True AMCG00002496
AMCG00002513 mRNA downstream 63028 17204463 ~ 17248752 (+) True AMCG00002513
AMCG00002512 mRNA downstream 129146 17270581 ~ 17272452 (+) True AMCG00002512
AMCG00002517 mRNA downstream 143636 17285071 ~ 17291512 (+) True AMCG00002517
AMCG00002511 mRNA downstream 181200 17322635 ~ 17353428 (+) True AMCG00002511
AMCG00002528 mRNA downstream 248510 17389945 ~ 17415896 (+) True AMCG00002528
TU154987 other upstream 177331 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 4007716 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 4075728 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 4996948 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 5301244 11835439 ~ 11836169 (+) True G122582
TU155222 other downstream 774001 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 1690579 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 1988968 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 3132654 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 5926689 23068124 ~ 23180043 (+) True AMCG00002623

Expression Profile