RNA id: TU155101


Basic Information

Item Value
RNA id TU155101
length 1629
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G123705
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17234370 ~ 17238544 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTTAACTAATAGGTAACATCAGTGAATCCCAGTACCAAGATGTAGCAGTACCCACATCAAAAGATTCTGTGGAAAATATATCTCAGATAATCCACGTTTTCCACGTTCAGTCACTGTCTAGTTTCATACTGACACAAACAGACCACAATATTGACATTGAGGAAAGCaggatttatttgtatgtatttatttaaaacaaaagctccaaagatttaaaaagaacGTTTTAAATAAATGGCCATCAATGTAGTTTTAACATTCATGGGAGGATATTTAcatcatatatgtatatgtatatttaagtgtgtgatatttaatattaatattaatattaatcagaTCAGTcaaatttcactttattttggaCATACTTAATATATGGTTTTGGTAGTTGGAGgtctttcaaaaatgtaaactgtaaacataGAATGGATGTTAAGTCAAACACTgtactttaaacattttaattaatagcaCCATGGATAACGATACCCTACAAACCCATAAAATAACATGGATTCAGTTCAGTGGACAAGACTGATGGCATGATTTGAGACCACTGGCTTTCAATAAATATAACCTTCATGATTTCCAGTACTCTTTTATCAGTCCTTATCCAAATTGGGCACTAGACTATTTATGACAAATCTAGAGGACACAAAGAATGACAAAGCTATTTAGTAACGCTCCACCTGGAAATCATTCCTATTAATGTACATCATCATGagcatttttaatgaaatgttcatTTCACATACAAGTAAACCTTAACTAATAATGTGAACATATTTCTTTGTGCACCAGTATTATTTCCCcattaatttcaaatcaaattccTACAAATCATCGCCTCCTTCACCACTTTAGTGACCATATTATTCTGTcgttctatttttattttatttgaggtaCTTGTTAATAATGATACAAGGCATATGAAGTATACATTAAGCACTTTCTACCAGGGAAACTGCTGATGAAATGTTCTACTTATGGATCACAGGCTGTGATATTTTATCCATACTTTTGTGATGCAACAAATCCAGTTTGGAAACAAGAACGTTTGTAGGGCTAAAGAAGCCATCTAATCTGTGTTACCCAGTAACACACCAGTTCTACggtacttttgtttttcactaaCACATAACAACTAAATTCTACACAAAATGCACATCTGATCAACCAGAGTTAAGACAGAGGCTTTCACAGTCCTCCTGGGTTTCAAATTTGTTCTGGTTTCCGCCGCAGCCACCGTACCAAAACCTCAAGCACAGGTTTTGCTCAGCATCGAAGTGCCATTTAAGGGTGAAGTTCCGGCAGTCTCCCTCATCTAATGTGAGACGGCACACGACTTGACTTTGAAGTTCCTTCTGTTGGGTGTCTGTAACTGGTtTTGCATCTCCTCTGCCTTCACTTCCACCATAGCCCACTTCTTCTGTATATTCTTCAACCCCTTCTCTTAgctcttcatcctcctcttcctccacttcATAATTGTATATCTTCTTCTCCCCTTGAATGTCAGGTTCCTCTGTGATCTCTTCTTCCGGCTCCTCTGTTATGGTTCCAGTCTCCTCTGTGTAACTGTAATATTCTTCTTCTGGAGCTGGAGTTTTAACTGGGA

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155036 lncRNA downstream 158821 17075312 ~ 17075549 (-) True G123646
TU155030 lncRNA downstream 184314 16995129 ~ 17050056 (-) True G123642
TU155025 lncRNA downstream 251724 16980831 ~ 16982646 (-) True G123637
TU154999 lncRNA downstream 274263 16958162 ~ 16960107 (-) False AMCG00002503
TU154878 lncRNA downstream 579507 16653499 ~ 16654863 (-) True G123527
TU155202 lncRNA upstream 421523 17660067 ~ 17675110 (-) True G123788
TU155213 lncRNA upstream 451494 17690038 ~ 17696504 (-) False AMCG00002524
TU155242 lncRNA upstream 572974 17811518 ~ 17815466 (-) True G123824
TU155254 lncRNA upstream 694920 17933464 ~ 17994763 (-) True AMCG00002533
TU155273 lncRNA upstream 812553 18051097 ~ 18052332 (-) True G123845
AMCG00002514 mRNA downstream 48462 17183401 ~ 17185908 (-) True AMCG00002514
AMCG00002510 mRNA downstream 76347 17137176 ~ 17158023 (-) True AMCG00002510
AMCG00002509 mRNA downstream 137287 17092906 ~ 17097083 (-) True AMCG00002509
AMCG00002508 mRNA downstream 144056 17080504 ~ 17090314 (-) True AMCG00002508
AMCG00002504 mRNA downstream 162445 17063407 ~ 17071925 (-) True AMCG00002504
AMCG00002516 mRNA upstream 68722 17307266 ~ 17308556 (-) True AMCG00002516
AMCG00002515 mRNA upstream 116106 17354650 ~ 17371962 (-) True AMCG00002515
AMCG00002518 mRNA upstream 177593 17416137 ~ 17423894 (-) True AMCG00002518
AMCG00002519 mRNA upstream 280461 17519005 ~ 17530234 (-) True AMCG00002519
AMCG00002522 mRNA upstream 306296 17544840 ~ 17553514 (-) True AMCG00002522
TU154950 other downstream 394648 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 2288059 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 3580134 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 4204964 13028197 ~ 13029406 (-) False G122862
TU155250 other upstream 683908 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 5847450 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 5943377 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 7023021 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 7053243 24291787 ~ 24339566 (-) True G124848

Expression Profile