RNA id: TU155202


Basic Information

Item Value
RNA id TU155202
length 2243
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G123788
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17660067 ~ 17675110 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tccATGTCATCAGTGATTAAGTTTATTGTTAAATGTGGAAAGAATGAAAACGTTACTGCACTACACATACAAATCAGTACTTcacatattattaaaaacagtttcactgaatattcaaaatgaaaccCTGTAAAAAACATGAAGGCACTTGCTGCTGACAGCTacattggttttaaaaatatcctACAGTGAAAACTAATTTCAAAGGCATATCTGGTATCAAATGTAGCCCAACAGCTCTGCTGCAATGAAGTTACAAAATAGGGGTTACATTGGACTTATTGGAGTATGGTGCAAAGTTACTCTTTACAATAAGACTATACAAAGATTGATTGCTTATAACAATTGTGCACGGCTTCCTCGCCCCTTGGCCTAAGCTTGTCTTCCTACAGCACCACATCGCACCTGCTGATCCCAGTagcctccacacacacacccctttaCAGATTCTCCTTCCACTGGGCAAACTGGATGAGGGGGTAAGGGATAAGTCCTTAGCAATGTCCTCTCCTTTCCCCAGTGTATCAGATTGCCACATTCGTCCCAGGCTGCCTTGTGTGTGGAGTCCACTGGTTCTCTCCTTATATATAAGAATTGCACCTATAAAAAGATGGATGTCCTGGAAATACACACAGAATGATCACAAACGAACAAAAGGACGCCTGTCTCATATAGAAATCATCTCCATCAACTGGTGGAGAAAAGGGCAGCCATGATGGATATCATATTGTTAACTTTGGCTTCAGCTGGTGTTCAAGAGCCTTTCAGGAAACATCATCCTAATGCTGTCAGAGTGTCTCATGTACTATTGCTGCTAGAAATGACAGatacagtaaattattttaaaatctacacTTGACAATCATTCCACGATGGCTTGTCTAACAAAGGAAATGCCCTACAAACCCCTTATACTCAGTTCCCCAAGGGCTAATGGATTACAAAACATTGGATATATCAAATGTACAGGAACCTAAACACCAAAATCACATCCCTGGcacatgaaaaaaatagaaaattatatacagaaaaaaaaaaaaatagacattgTTTCCAAACAGAAGTACTGCATATTAATaagaaaaaaaaaaaaaagacgtgCCACATACAAACAGTGCAACCATACACGCCCACTGCTCagaataaatagttttattaagTGATTACAGACCTGATCAATAGAAACATCACTACAATATCTGAAATTACAGGACCAACCATCTTCCAGCTTGAGAACTGTACATTCTTCAAGTGAGACACACCACTGCCTTTTCCTTCTGTCCTTACGCAGCAACTATAGGATCTCTAGTTGTACAAACAATGCAACCTATTTGCCACTTCAGTGCCATTAATCTAAAAGATTAGTTTCCAAGATAAACTGGCCAAAATAAAATCCACGTATGTAGTGCATCCTTCAATTATATTGCATGTTATTAGATAAACAACCTCAGATGCGCATGTTACGCACAACAAAGGGGCATTTTAAGCCTTTTCAGGTGCATTATAGCTTTTCCAGTGTCTGGACACAACATTGTAATTCTTGTCCTACAATGACCCCTTAAAGACCAggtttgtaaattgcattatgcttatttcagattttaaatgtaatctttaaaaGTATGCCTTGAGGTTTGATGTTCCCTTTTCTTTCCTGGTTAATTTATTCCAGTTGCTGCTTTATGGTCACCTGGACATGCATTTCCAAGTCCATCCATCCTGAGCTAAAACTTTACACTGGTCTTTCAAGGGATAAAAGTAGATCTGATCCTAATTTGGACATTTCCAAACAGGCAGCAAAAGAAGACAAAATTAGCTAACCATCAGCTTTATTCTAACAACCAAAGTAAACAATGTAAACCAGATGTAGGAGCCGTCCCACCAGTGCTCATGTTTAGCGAGACGTCCATACCCCGTTCCTTCTGTGTAGCCATTCTGTGACCTTTTCAGAATTCCCTTACGGACCAAACAGTAAAGAACCAAGTACGGAAAGGTCCACCAGTCCTGTAAACATgaagtctttgtttttttgtttttgttttgctctgtgattcacaccaaaaaaaaaaaaaaaggggagaGGCAGACTGGGGTGGGATGATGAAAGGGCTTCTGATATCGTCTTCAGGATTCTTCACCGTCTACTGGAGATGTCGGGGTAGTTGGGGATGATGCTTCCATTTCTGATCTACTTGAAATCCGATCCAGTTCTGCCTGCACATCTGTTAAGCCATGCTTTTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155101 lncRNA downstream 421523 17234370 ~ 17238544 (-) True G123705
TU155036 lncRNA downstream 584518 17075312 ~ 17075549 (-) True G123646
TU155030 lncRNA downstream 610011 16995129 ~ 17050056 (-) True G123642
TU155025 lncRNA downstream 677421 16980831 ~ 16982646 (-) True G123637
TU154999 lncRNA downstream 699960 16958162 ~ 16960107 (-) False AMCG00002503
TU155213 lncRNA upstream 14928 17690038 ~ 17696504 (-) False AMCG00002524
TU155242 lncRNA upstream 136408 17811518 ~ 17815466 (-) True G123824
TU155254 lncRNA upstream 258354 17933464 ~ 17994763 (-) True AMCG00002533
TU155273 lncRNA upstream 375987 18051097 ~ 18052332 (-) True G123845
TU155304 lncRNA upstream 530558 18205668 ~ 18206132 (-) True G123876
AMCG00002520 mRNA downstream 53118 17598649 ~ 17606949 (-) True AMCG00002520
AMCG00002521 mRNA downstream 87078 17558828 ~ 17572989 (-) True AMCG00002521
AMCG00002522 mRNA downstream 106553 17544840 ~ 17553514 (-) True AMCG00002522
AMCG00002519 mRNA downstream 129833 17519005 ~ 17530234 (-) True AMCG00002519
AMCG00002518 mRNA downstream 236173 17416137 ~ 17423894 (-) True AMCG00002518
AMCG00002523 mRNA upstream 2912 17678022 ~ 17685297 (-) True AMCG00002523
AMCG00002524 mRNA upstream 14898 17690008 ~ 17706289 (-) True AMCG00002524
AMCG00002530 mRNA upstream 163469 17838579 ~ 17857068 (-) True AMCG00002530
AMCG00002531 mRNA upstream 200895 17876005 ~ 17902810 (-) True AMCG00002531
AMCG00002533 mRNA upstream 316951 17992061 ~ 18041573 (-) False AMCG00002533
TU154950 other downstream 820345 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 2713756 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4005831 13649228 ~ 13654236 (-) False AMCG00002421
TU154046 other downstream 4630661 13028197 ~ 13029406 (-) False G122862
TU155250 other upstream 247342 17922452 ~ 17989465 (-) True G123829
TU156333 other upstream 5410884 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 5506811 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 6586455 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 6616677 24291787 ~ 24339566 (-) True G124848

Expression Profile