RNA id: TU155257


Basic Information

Item Value
RNA id TU155257
length 1327
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G123833
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18051012 ~ 18052338 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tataaaaccTAAGCAGTAGATGCATTTAACATAACAATATgtcctttttcatgttttttgtgttggttttttttgttgGAAAAGTTTATTATGTCCAACTATATTAATATATGGGTCACAGCAACACCGGTTTTGTTGAAGTTTCACTGAAAGCTAAAAGTAATTCGCTGGTGGGGGTGGTAGACTCCCAACTGCTAGTGTGCTTGCACAACATTTGCAGACCAAAAGCTGCAACCAAAAACCAAGGGAAGAGACGCACGGGAGTCTGGACAGGAGTGCTGCAGCGATGGGACATTTGAAgtgaatgaatgtgtttttaactcAAACacaagcttatatatatatatatttttgtgatagaccaatatactttttgtttatatatatatatatatatatgtatatatactagtTTAACTTTGAGGAAATGCAGTTGTCAAAGACTTGAATTAGGGGCAGAAGAAATTAAGTTGATAATCAACGATAATCTCCATTTTTACCATTGAGGCCTATGTCTGACAGCTCTTGTGTGAGGCCTGTTTCCATTGATGTAGGAGCGGatagtcatttattttagtggTACAGAAGCACCAGTATAGATTAACCTGAGCGATTTTCCTTGTGAGGACAGATTGAAAGCATCTGATACTGTAATGTTAGCTTTAAAGCCAATTTTTTGTAAGATGGCACAATGGCAAGCTTTGACCTGTGTATTAGTGCCTGAGCATAAGTGTTTCAGCATCTGACTGACTTAACATTGGTCTGCCAAGCCATGACTGAAGTATCACTCGCACTGAGGGTTTATTGTAAATAGTTCATGATTTGATCTGTTTTAACCTAGTTCTACATGTGGCGAACATGATATAATAGatcttgtatatattttgaagcaAAGCACATGGAACAATAATGCATGTGTCTTAATGAGAAAAAAGCCTATTTATTCTTTACTTTAGCATTTTAgttaaaaaactaacaaacagttgATATTATTTGCTGTTGTATGTGTGCACTTCTTGTCAGTAACTTGAATAtctcatttgaatgtattaacaGCAGATATGTCcataactgtttttatttacacaatggATTTTACTCCATTTCACCATAAAGGGAAAGTATGCTacttgtaaattgtaaatggtATGTATGCAATAAGAATAGTCATGttaaccttttttaaaaaatgaaaaaagttcaacaaaaataaagatgaagGATATGTCAAAGACACTGGTAACACCATTAGCATTGGGTTGTACTTTCAGGAATTTTAAATGCTGTTATTctcaaaaaagacaaatgttatcaataaaaacaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155224 lncRNA upstream 110379 17926699 ~ 17940633 (+) True G123808
TU155212 lncRNA upstream 290817 17695860 ~ 17760195 (+) True G123797
TU155044 lncRNA upstream 902676 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA upstream 909577 17137413 ~ 17141435 (+) True G123659
TU155013 lncRNA upstream 1065108 16980793 ~ 16985904 (+) False AMCG00002496
TU155357 lncRNA downstream 452550 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA downstream 454566 18506904 ~ 18509774 (+) False G123916
TU155389 lncRNA downstream 502147 18554485 ~ 18556562 (+) True G123943
TU155399 lncRNA downstream 531831 18584169 ~ 18586027 (+) True G123950
TU155463 lncRNA downstream 792030 18844368 ~ 18861644 (+) True G123993
AMCG00002535 mRNA upstream 96 17998046 ~ 18050916 (+) True AMCG00002535
AMCG00002527 mRNA upstream 239285 17806735 ~ 17811727 (+) True AMCG00002527
AMCG00002525 mRNA upstream 375902 17661879 ~ 17675110 (+) True AMCG00002525
AMCG00002526 mRNA upstream 389839 17652475 ~ 17661173 (+) True AMCG00002526
AMCG00002529 mRNA upstream 579720 17445920 ~ 17471292 (+) True AMCG00002529
AMCG00002534 mRNA downstream 92874 18145212 ~ 18161564 (+) True AMCG00002534
AMCG00002540 mRNA downstream 285418 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002546 mRNA downstream 404713 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002553 mRNA downstream 747522 18799860 ~ 18810379 (+) True AMCG00002553
AMCG00002562 mRNA downstream 1021355 19073693 ~ 19127947 (+) True AMCG00002562
TU155222 other upstream 66282 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 1090930 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 4921315 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 4989327 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 5910547 12133786 ~ 12140465 (+) True G122746
TU155458 other downstream 779676 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 1078065 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 2221751 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 5015786 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 5100310 23152648 ~ 23290535 (+) True G124689

Expression Profile