RNA id: TU155357


Basic Information

Item Value
RNA id TU155357
length 2984
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id G123916
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18504888 ~ 18509774 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATTTTAACACTGCCTTTCTTTATTTGGTAGTTATGTAAAATGGCCTCAACAGAAATCCTCACCTGCTCTGCTGATGCAAACTGCAAAGGTTTCCGTTGACTTTCCATCTTGGAGCTGTGCTtcagcaaaatgcatttttgttctgCTCTAAGCCTTTCCACAAGGTTCTGGCAACCGTCCCTGCATTTACCAGGGCTGATAAGTTGACTATCCCTGTGGGAACAATTGATAAAGCTATCCCTTATAAAGACTCAAGCTTGGGGTCTTTCACAACttcagacaaatacaaaaaagggaAATCCACACCAAAACACAAGCCAACATACTTtagcattcaattattaaaaggattcttgttaaattaaatactcaATACAAGGTATTCATTAATGTACACAGTAGTCACATGTTTTTAGGCAGGCAACCTGACAATCACATGCACTCTTTTACTTAGCATAAAGGgaattgtaaaaagaaaaaccaaaccTGACCCTGGACAGTGAgagtaatgcatttcaaaatgcccagtagtttttttttagttcaccTGAATGTCGTAGtcattaataaacatgttcatcTAACTTTTGAGCACAAAACAAATTCCAATATGGCAAAACTTTTTGTTGGTTCCTGGGGTTCCCAATATACCAGCCTGCTAGAACATGTCCCTGTTTATTAACAATTGGTTTTAATCCTATGCAATTTCCAAAGTATTTATGCTTGACCTGCACCATTTATCATGTCATGTGTGGAGATGAAAGAATCCCCCATACCAGCCATCTCTACAAGCAACCAAACTCACTACCTTTAtaggggaaagaaaatacatatataaaacaatccCAATGTAAGGTGGAAATCTAGTGgcttaattaaaaggaaattaaaatgtagtttcaCAGTCTCCATAAAATCTCACTGCTGGAAAAGTGCCACTTGGGATCCCCTGCTCAGCTCGCCCCACGCcctaattaagtaattatccGCTCATTGCAACTGTAAATTGTACAAAGCCTAAAAGCAAGTCCCATGAGAAACAGCCGAGGAAATTCGTTAATTATACGTTGTCCATGGGGACCTCATACTTCAGACATTTCACAAGAAAACAAGTCACAGGCACATTACCCTTAATGATcatctacacacacacctaaCTCATGTCTGACTACCAAATTGTACACCAGCCTTTAAACTCTGAAACAAACCTTTTGACATCTCAGCTGTGATTAAAACAATGAAGCTGATTACACAGCCTGGATCTTTGGCCGAGAACCTCAAGATGATGAATGTTCGTAAATGTTCAAGTACATAGGATTTGAGAGAAATTGTGCCAATCGTGTCCTATTTTTGCATTCAGtgtcttgaaatgcattttaataccCAAACTTTAGGCACCACCAGGTGAGATGAACCTTAGTTTTACTCTTTAATACTGAAAGGAAACTACAGCTCTTCATTTGCAAGAAATCATAAGCTACAATATTTTAACTTTCTGCACATCTGACCTCCCGTTAACAGTGTGGGGTTGATGCACAAGACATGGCCATCAGTGCTCTTAAACCAAAGCAACACTTTcacatacatttactttttttttatgtaaagctATAATAAACATTAAGTCACTTGTCCTAGAACAGCAATGTACAAATGTCCCATTAAACAGCCTCATTTTCTATCCAATATACTGAACAGGAACTCAGCTCAGCAATTTTAGAATggtataaaaaaggaaaaactcacTTAAAAATACCACAAACTACAATTTATTAGCCATATTTTATTGTCAAATGAAGAGTTTATGCCTTTTTCTGGGCTTCTTTTTGGAGCTTCTTCACCTCATGCTTGATGATCTTGTTCCTCATCTTCTTGGCCTTCATCACCTTGAATCGGTCAAAGTCTGTCATTTTGGCCCTCTGTAAGAAAAGAGCAAATGTCAGTCAATGGCAAAGCCCCCGTCTTTTCCCCCCCCATTTAAGTCCAGAAAAGTTTTCAAATGCATCAGACACTGTTCAGCCATTTatcaaactttttttgtaaCAGCAGTATATCCATTGAGTTTACTCACTGGAAATAATCAATTATGAAAAGTAGTAAATATACAAACACCACCTGCCCTCTTAAAGAGCTTACAATTCATTACACTggcattcaataaaaacttcagctttactgtattttaactgGTTAAAGTGGAAAACTTTGTTAAGAATGATTGTAATATTTTGGTGGGCCACTAATGCATTTAGAAGAGAGGTTAGTTTAATGCAAGTTTGGTTGCTCTTGCAGCTAGTACATTAATGTGCCCATCATTATATACAGAGGTTTAAGTCTGGTATCTTTTACagaaaatctacattaaatgtcTATGACTATAAGACAGTATTTATAAATACTGGGAAATTGCTATTCCAACAAAGACAAGGAGTGCAACAGTCAGAGGTAATGGGACGATGCTGTTCTCTCTGCCTCCTGGAAACCCAGGTCTGCCACACACTACAAACAGACACCGTTCAAGGCAGtaattacacacaaataaatacctttTGTCTGGCTTCAATTTTCTTCGCCCAGCTGCTCTGAGCCCACTTCTCATTAACACCAGCCTTCTCCCAGGCCCGCCTCACAAACTTCTGACGAGCACTGGGGCACCTTGATGACAAAATCGGTGAGCTGCATGCACTTGAAAGGCATGGACTGCCTCTTCACACCAGTGCAAGGGCCATCTACCAGAGCCTGTTCTGGTCAATGACATCTACGATGGCCACCAATTTGCCCTCATGGGGGCCAAAGGAGATGTAGGCAACCCGGCCAATCTCGACGAAACGCTTGAACACCTTCATGCGCTCACCATGATGGCAGTCCACGAACAGAAAGGACTTGGCGGCTTCCGTTCCCCGATGATGCTGCTTCCGCTCCGAAGACAGCGGTATCTGCGCAAGCGCGGGATGACGTCAACAGCGGGACTTGCGGAAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155257 lncRNA upstream 452550 18051012 ~ 18052338 (+) True G123833
TU155224 lncRNA upstream 564255 17926699 ~ 17940633 (+) True G123808
TU155212 lncRNA upstream 744693 17695860 ~ 17760195 (+) True G123797
TU155044 lncRNA upstream 1356552 17091975 ~ 17148336 (+) True G123653
TU155050 lncRNA upstream 1363453 17137413 ~ 17141435 (+) True G123659
TU155389 lncRNA downstream 44711 18554485 ~ 18556562 (+) True G123943
TU155399 lncRNA downstream 74395 18584169 ~ 18586027 (+) True G123950
TU155463 lncRNA downstream 334594 18844368 ~ 18861644 (+) True G123993
TU155467 lncRNA downstream 352904 18862678 ~ 18863965 (+) True G123997
TU155521 lncRNA downstream 572889 19082663 ~ 19083803 (+) False AMCG00002562
AMCG00002546 mRNA upstream 46098 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002540 mRNA upstream 158690 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002534 mRNA upstream 343324 18145212 ~ 18161564 (+) True AMCG00002534
AMCG00002535 mRNA upstream 453972 17998046 ~ 18050916 (+) True AMCG00002535
AMCG00002527 mRNA upstream 693161 17806735 ~ 17811727 (+) True AMCG00002527
AMCG00002553 mRNA downstream 290086 18799860 ~ 18810379 (+) True AMCG00002553
AMCG00002562 mRNA downstream 563919 19073693 ~ 19127947 (+) True AMCG00002562
AMCG00002561 mRNA downstream 620293 19130067 ~ 19133567 (+) True AMCG00002561
AMCG00002565 mRNA downstream 857542 19367316 ~ 19385301 (+) True AMCG00002565
AMCG00002564 mRNA downstream 897284 19407058 ~ 19410399 (+) True AMCG00002564
TU155222 other upstream 520158 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 1544806 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 5375191 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 5443203 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 6364423 12133786 ~ 12140465 (+) True G122746
TU155458 other downstream 322240 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 620629 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 1764315 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 4558350 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 4642874 23152648 ~ 23290535 (+) True G124689

Expression Profile