RNA id: TU155389


Basic Information

Item Value
RNA id TU155389
length 2055
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G123943
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18554485 ~ 18556562 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCAGACCTTAGCATGCTTTATATCAAATCCATTTGACACTATCAGTACAAAATAAGAGCATGGTTTtggaaattacttatttttcccTGTTGCAAACTAACCCTGAATCTCTGTATGATCCAAGTAGAGTATTATTATAGAATACTTTTAGGTGTACTAAATTCAAAAGGCCTTGTATTGCAAAATACTATAGTATAATGTGTATCTTTGTTTCATATTTAGTAGAATTTCACTATtcccattttaaatattacagataATACAATTTTCTACCCAAGAATAAAACTACACAcaatcaaaacattgttttggtgcatgacatttattattttaatttagtcaaAATCAGTGGATATGAAATGCTGTCTAGTAAGCACAGCCTTGGAGATTACATACACATCGATATCTATACTGCAGTGGTCCCaattcaaacaattaaacagctcctctcacaaaaaaataagacataCAGACTCCTGCTGGCAGTTTCATTATCAGATTTGTGTTCAAtatgtttctttcagtttaaacaAGGGCAACAAGTCAGTCATCTGCAGATGGGCAAATCTCTCTCAATCACCCTCACACAAAATCCCCTGCTATATTTTTAGCTCCTTGACCATTCTTTGGAGAGGATTTCCAGCAGCTTGGATGAACAACGGTATTAAGGTTAAGCACACAGAGGAGCACACATGCTACCGTAAGGCTTTTGGGTGTTTCTGCACTGTCAGTTGTCATTAATGCAGGGTGAACCAGGAGCTAGAACAGGCAGGGCTACACAACCGTGGCATGTGCCAGACGTCTGCATAAGAATGCAAAGGGCATCCAGCTTTAAATCACATAGAAATATCAATGTTGACAGTGAGCCTACACGATGGCCGACGGTGGAAACTATTACTAAAGCCCACAACCTTTGGTCCAGGGTCCCACCCATCCAGGGTCCCATCCTCTCAATCtctttctataaatatatatacagatgagtgacaaattaaaggaaaacctgaataaatgagtggaggaacataacgaatgcagatgccttcaaacaggtgtactgcatgatacaattaagtctcattacaaagacaaatgcacatttgagtgTTCAGTGGTGCacaaaccataggcactggtctacagagatgtggaaaaactgacatggtcagatgagtcatccttcaccttATTCTCgtcaagtgggcgagtgcatgtgtgggacaccaagtgAATGGTagaggcctgactgcttgacccctacagagggggtccggaggctctgttacgctgtggggggcattttcgtACAACTTGTCGCaatagagggaagggtcactgtaAATCATTAGAAAGTTATTCGGAGTGATCACCTTTactcgcagtcaccagatctccaGTCACcagcacctatgggagattttggaccaacgtgtcagacagcgctctccaccaccatcatcaaaatatcaaatgagggaatatcttttggaagaatggtgctcatccctccagtagagttcagagactcatagaatctgtgccaagagcattgaagctgttctggcggctcgtggtgcccaaaaccttactgagacactttatgttggttttcctttaatttgtcacccgtctgtatatgtatgtgaatgtgTTTATACACTAGTCTAAAGGTTTTTATTCCCTTTATGGCCTCTTCCAGAGTCCAAACCATTCCTTGCCTAAGGAAGGGCAATATGTCCAATAGCTGACACAACCTCTTGCAtatgcaaacacatttaattgggCAGTCTTTCTGTCTTGGGTGCGTGGGAAGGTAACAGTGTCGGTGAAGGTGCCCCTCTCTGTGTTCGTGCTCTGTTCTCACTGCTGCAGGATGAGGGAGGCGGCGCTGGCGATGCGCTTCCAGGCGAGCTGGATGTGCTGGGAGTCGGTGGTGCGCGCACACACGGCAAAGCGCAGCACGAACTTGCCCGACAGCTGACAGGGTACTAGGTGGATCTTCCTCGTGTCGTTTATACTCTTGAGAAGTTTCTCATTCAAGTCATTAGGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155357 lncRNA upstream 44711 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA upstream 44711 18506904 ~ 18509774 (+) False G123916
TU155257 lncRNA upstream 502147 18051012 ~ 18052338 (+) True G123833
TU155224 lncRNA upstream 613852 17926699 ~ 17940633 (+) True G123808
TU155212 lncRNA upstream 794290 17695860 ~ 17760195 (+) True G123797
TU155399 lncRNA downstream 27607 18584169 ~ 18586027 (+) True G123950
TU155463 lncRNA downstream 287806 18844368 ~ 18861644 (+) True G123993
TU155467 lncRNA downstream 306116 18862678 ~ 18863965 (+) True G123997
TU155521 lncRNA downstream 526101 19082663 ~ 19083803 (+) False AMCG00002562
TU155524 lncRNA downstream 529573 19086135 ~ 19087155 (+) False AMCG00002562
AMCG00002546 mRNA upstream 95695 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002540 mRNA upstream 208287 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002534 mRNA upstream 392921 18145212 ~ 18161564 (+) True AMCG00002534
AMCG00002535 mRNA upstream 503569 17998046 ~ 18050916 (+) True AMCG00002535
AMCG00002527 mRNA upstream 742758 17806735 ~ 17811727 (+) True AMCG00002527
AMCG00002553 mRNA downstream 243298 18799860 ~ 18810379 (+) True AMCG00002553
AMCG00002562 mRNA downstream 517131 19073693 ~ 19127947 (+) True AMCG00002562
AMCG00002561 mRNA downstream 573505 19130067 ~ 19133567 (+) True AMCG00002561
AMCG00002565 mRNA downstream 810754 19367316 ~ 19385301 (+) True AMCG00002565
AMCG00002564 mRNA downstream 850496 19407058 ~ 19410399 (+) True AMCG00002564
TU155222 other upstream 569755 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 1594403 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 5424788 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 5492800 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 6414020 12133786 ~ 12140465 (+) True G122746
TU155458 other downstream 275452 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 573841 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 1717527 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 4511562 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 4596086 23152648 ~ 23290535 (+) True G124689

Expression Profile