RNA id: TU155412


Basic Information

Item Value
RNA id TU155412
length 1222
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G123961
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18584709 ~ 18585930 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttgcttttttattattatttgataagTGTACAGATtgagattttattatttgttttatgctgtTGTTTGTCACAAAAAATACCCTTTAAGGAATATAtctgtaatgtttaaattaagctACTTTCTAGGTATTAAACCTGATTATTGGCATGCATCTTTACAAGTTGTTTAAGAACAATTTAAgctaaaagaagaaaaaaaaatgcaatttataaatTCACTGgttaaaagaaaattattttttatatattgcttTACAATTATGAGTAACTATCTTGCCATgctgtctaaaaataaaatagtgtattgctttttttatataaaagcatTGAAGTAATATTCTCGCTTAGTTAACATAATGCATTGCCTACTAATTCTGAGCTGGTAACTCATACTGAATTAAATCAGTGGCTGAAGGAAATGTACTTTTTCTATTTAAGTGACATGAATGTAACAGGGTTGCTCAGGGTTGAATTTGGAGCCTGTTGAAAACTGGTCGTTCAGACTagtgagatttttatttttatttttggagtaATTTGTGTAGTAATCTTGATTTGAGTTGAGGAGGGGGACACCAAACATTTTTTTGCTATTTAGTTTGCTTTAAGGTTGTACAATAATAGATGTCAAATATAACAATTACAGTActtgtattttcagtttttgtttcttctttctttcgTCACTTTTGACGtcaaaacgttgacccacccgctaatagaaaactgcacaacctgtactcagttgcggcttcatttttagttgaTGCCAGATCATCAGAAATGTAACCTCTATGAtatacaggtttttagtttgctattagcaggtgggtcaaagttttgatttaatccagcccaacATCTTCTCTGCACTAACCTACACCAGATAATTTGACCAATCGTTGAAACTTTTTTCAGTGATGACTCTTGTGCTTTGCATATTTTGTCACAATGCAAGATTTAAAAGCTGTAAAAAGgagtaaagtaaaatatttcagGGAATGCaaataagaggaaaaaaaaagaaaaggatattAACTTATCTCTTTCTTAAGAGAAAATCTTGTATTCATAATGTGCTTTGCTTCATTCTGTAAATAGCGAAATGGCTTATGAATCTTAATTGTAACCTTTTCAGGTATTTTTGTACAAATAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155370 lncRNA downstream 115102 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 378577 18205668 ~ 18206132 (-) True G123876
TU155273 lncRNA downstream 532377 18051097 ~ 18052332 (-) True G123845
TU155254 lncRNA downstream 589946 17933464 ~ 17994763 (-) True AMCG00002533
TU155242 lncRNA downstream 769243 17811518 ~ 17815466 (-) True G123824
TU155446 lncRNA upstream 196215 18782145 ~ 18782366 (-) True G123981
TU155557 lncRNA upstream 697948 19283878 ~ 19284293 (-) True G124068
TU155687 lncRNA upstream 1716142 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 1954377 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 2393167 20979097 ~ 21116735 (-) True G124327
AMCG00002550 mRNA downstream 11727 18554798 ~ 18572982 (-) True AMCG00002550
AMCG00002549 mRNA downstream 39634 18528653 ~ 18545075 (-) True AMCG00002549
AMCG00002545 mRNA downstream 76039 18504897 ~ 18508670 (-) True AMCG00002545
AMCG00002544 mRNA downstream 92529 18482733 ~ 18492180 (-) True AMCG00002544
AMCG00002543 mRNA downstream 157371 18426724 ~ 18427338 (-) True AMCG00002543
AMCG00002547 mRNA upstream 148 18586078 ~ 18602108 (-) True AMCG00002547
AMCG00002552 mRNA upstream 43719 18629649 ~ 18632830 (-) True AMCG00002552
AMCG00002548 mRNA upstream 115965 18701895 ~ 18713091 (-) True AMCG00002548
AMCG00002551 mRNA upstream 137467 18723397 ~ 18759586 (-) True AMCG00002551
AMCG00002557 mRNA upstream 200190 18786120 ~ 18786641 (-) True AMCG00002557
TU155250 other downstream 595244 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 1744987 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 3638398 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 4930473 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 5555303 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 4500064 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 4595991 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 5675635 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 5705857 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 7717952 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile