RNA id: TU155467


Basic Information

Item Value
RNA id TU155467
length 1288
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G123997
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18862678 ~ 18863965 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttgtattatttattaaactgtacatgtttaattgatacattaacttcagactataaccccaataattcaattttatacAATTAACAGCTGCCAGCGATGGCTggaggctacttaaaatagatTTCATGTTAATATTGTATATCAGTTGGCACAGTGATTAGGGAACAGTGCTGTGAATCTGgtgatcttattttttttaatatacagtttcctggagttaaacagtATGAGAGTAGAACGCCGGGGCGAATTGTCAGGGGACCTCCTGCTCACTGCATAAAAGAGAGACCAATGTCCTCAAAAAATTACCATTGTTATTaaattcatttattaaaaaaaacctgtataTTTCTCTTATGCACTGAtggttttgatctgtaattttagactgtattgcacttttataatgctctcatgttttgtaagttgccttgaatgtacttttttattaattgatcaGCAAGAATGTATTCAAGTAATTGCAAAATTCACAGAATAGGTACTTTTCATCATGTGAGAAATTACCTTTCAGTTCTGTCACAAAGCAggcacagaaaacaacaaccagcAAGCAGTGACCGCAGCATAGAGAATCTGGATGTGCCATTGTCAAATGTGTcaatagcaacaacaaaaaaatgatggCAATCAATCAAGAGAGACACTTCTGTTTAGATTATTTTGTCATGCAagaaatgtttttcagcagAAGATGTACTTTTTGAATATCTATTATTCTGATATTTCAGATAGTTCTTATTACAATTGAATACTTGTCTGTGAAGTAAAATAGGAGTAGTtcagttctttattttaaattgtcattatttttataattatatatatatatattttttttttttaatgtagttttagATTTTTGCTATTGGCTTAGTATTAATACAGTTTCagatggtttcacagacctttaTAACGACTAGTCTTGGGCTACTTTAGCTCAAATAACATTGGATAGTCCAAGCCTAGTGCTTATTTGGGTCTGTGATCcacacatttattgtatttaaagaaaatattccaTATGTATGTACATGCAACTCATGTGTGATTGTGACcagttttgtttgaaatgtaaaaatatttgctACACCTATGGGGTTGTAAGTACTCGTTGCttattgttgttaatgtttattatatccacctaattaaaacattaaatgcatttgtataATACTGTCACTTACAGACAACACAGATCAATTTGATAATGAAATGTAAGTCTTTCAATGCAGgtctgttaaataaaaaaatgcataaggTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155463 lncRNA upstream 1034 18844368 ~ 18861644 (+) True G123993
TU155399 lncRNA upstream 276651 18584169 ~ 18586027 (+) True G123950
TU155389 lncRNA upstream 306116 18554485 ~ 18556562 (+) True G123943
TU155357 lncRNA upstream 352904 18504888 ~ 18509774 (+) True G123916
TU155358 lncRNA upstream 352904 18506904 ~ 18509774 (+) False G123916
TU155521 lncRNA downstream 218698 19082663 ~ 19083803 (+) False AMCG00002562
TU155524 lncRNA downstream 222170 19086135 ~ 19087155 (+) False AMCG00002562
TU155556 lncRNA downstream 419913 19283878 ~ 19284277 (+) True G124067
TU155559 lncRNA downstream 469834 19333799 ~ 19384234 (+) True G124070
TU155588 lncRNA downstream 527158 19391123 ~ 19394724 (+) True G124094
AMCG00002553 mRNA upstream 52299 18799860 ~ 18810379 (+) True AMCG00002553
AMCG00002546 mRNA upstream 403888 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002540 mRNA upstream 516480 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002534 mRNA upstream 701114 18145212 ~ 18161564 (+) True AMCG00002534
AMCG00002535 mRNA upstream 811762 17998046 ~ 18050916 (+) True AMCG00002535
AMCG00002562 mRNA downstream 209728 19073693 ~ 19127947 (+) True AMCG00002562
AMCG00002561 mRNA downstream 266102 19130067 ~ 19133567 (+) True AMCG00002561
AMCG00002565 mRNA downstream 503351 19367316 ~ 19385301 (+) True AMCG00002565
AMCG00002564 mRNA downstream 543093 19407058 ~ 19410399 (+) True AMCG00002564
AMCG00002571 mRNA downstream 1166193 20030158 ~ 20033860 (+) True AMCG00002571
TU155458 other upstream 24147 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 877948 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 1902596 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 5732981 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 5800993 13058073 ~ 13061685 (+) False AMCG00002388
TU155541 other downstream 266438 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 1410124 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 4204159 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 4288683 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 4813970 23677935 ~ 23681385 (+) True G124769

Expression Profile