RNA id: TU155557


Basic Information

Item Value
RNA id TU155557
length 416
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G124068
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19283878 ~ 19284293 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccgttgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtacgttgcgaggtggggcctccatggatcggacctgtttgtccagcacatcccacagatgctctattggattgagatcaggggaatttggaagccaagtcaacactttgaactcgtgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatgctcacgtgcccattgtagtcactttcggcagtggacaggggtcagcatcggcaccctgactggtctgtggatacgcagccccatacgcaacaaactgcactgcactgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttg

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155446 lncRNA downstream 501512 18782145 ~ 18782366 (-) True G123981
TU155412 lncRNA downstream 697948 18584709 ~ 18585930 (-) True G123961
TU155370 lncRNA downstream 814271 18469234 ~ 18469607 (-) True G123926
TU155304 lncRNA downstream 1077746 18205668 ~ 18206132 (-) True G123876
TU155273 lncRNA downstream 1231546 18051097 ~ 18052332 (-) True G123845
TU155687 lncRNA upstream 1017779 20302072 ~ 20334454 (-) True G124175
TU155736 lncRNA upstream 1256014 20540307 ~ 20540523 (-) True G124222
TU155844 lncRNA upstream 1694804 20979097 ~ 21116735 (-) True G124327
TU155898 lncRNA upstream 2362762 21647055 ~ 21678545 (-) True AMCG00002584
TU155935 lncRNA upstream 2510480 21794773 ~ 21794988 (-) True G124402
AMCG00002558 mRNA downstream 25248 19248630 ~ 19258630 (-) True AMCG00002558
AMCG00002559 mRNA downstream 109265 19171519 ~ 19174613 (-) True AMCG00002559
AMCG00002560 mRNA downstream 123542 19133195 ~ 19160336 (-) True AMCG00002560
AMCG00002554 mRNA downstream 304921 18900273 ~ 18978957 (-) True AMCG00002554
AMCG00002555 mRNA downstream 388318 18871363 ~ 18895560 (-) True AMCG00002555
AMCG00002563 mRNA upstream 49618 19333911 ~ 19351773 (-) True AMCG00002563
AMCG00002567 mRNA upstream 78042 19362335 ~ 19366244 (-) True AMCG00002567
AMCG00002566 mRNA upstream 110049 19394342 ~ 19403623 (-) True AMCG00002566
AMCG00002568 mRNA upstream 197573 19481866 ~ 19493271 (-) True AMCG00002568
AMCG00002569 mRNA upstream 238559 19522852 ~ 19543805 (-) True AMCG00002569
TU155250 other downstream 1294413 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 2444156 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 4337567 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 5629642 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 6254472 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 3801701 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 3897628 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 4977272 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 5007494 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 7019589 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile