RNA id: TU155559


Basic Information

Item Value
RNA id TU155559
length 1889
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G124070
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19333799 ~ 19384234 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aagATCACCACAGTGGCAGCCAGGcaactttttctcttttttccttttttaagtgtatatatatatatatattttggtttattgtCAGGACTCTGATGTAACATGATAGGACAAGCCTCTAGTATTAAACTGCCTGCCACACTTAAAGACCGAAACCGCAAAAGCCAAATTTAAAAGCCTGCATTGACGCATAAACGTAAAGCATGGTTTTGGGTTGACTCGTTTATGTTAGCTTAGTTAAATCCATTAATACAACAGCAGGTATATCTTTTTCCACTTGGGTCTAATTCACTCCAGTTTTTGCTTGGTTCTCCCTACCAATAAAATGACACATGGTTATGTAGAGCACTGTTAAGCACTACTCTACAATGGAATGTGAAATAAGTGAAAACTAAACACGTAACTGCATATAACAGGCTATGTGGCAGTCGGCTTGTTTTAGCTGCTAAAAGTAGGTTTAAAGAAATGCTTTCAATACAGTATAAATCTCAACCTTGTTAAATTAAGCTACCTTCTGAAGACTACAGAAATGCATCTTAACATACATTTCGATCACTGTTAGGAGATGTATTCCCTTATAGTATTTGTTGAGAAAAAGGAcctctgttttaaaacatttgactttAAACATTCATAATACTGGTATCATGTATCATTGTGAATAATAAGTTGGGACAACCATGGTGCTTTTCAGACTCGGGTCAGGCAATAACCTTAGTTTGAAAAGCTCACGAGCAGTGGTTGTCacgaggagaggagaagagaaaaaaaaaaaatccacttgcATAGTATACCTGTATGCATCAGTAACGTTTAAGTGACAGCAATACAGTTTGTGCGCCATATATTTGCTGCACCACGATGcaatactgtaaaaaaatacttcagGCAATGCATACAGCAATGGAAGTACttggtattttttttgtgtgtttttttctattttttttcagttgtttttttttgtagtttttttttttttttttttttgtttttttttttttttttatatgccaCTGTGCCTTTGTAGAGTTATTTTTATTGACACCATGAAACAATATTGTACATGTGTTGTCATTAAAAGTAGGAAACACTGCAAAGCTAAATGCTACTGTTTGAGATTGTTCAGTAATGTGGCTCAGAAATTTATTTTCATGCGTGCATAGGCCAATGAGTCCAATGGATAGATTCAGTGCCTCTTTCTGAGCTTGCTCAGATCTCAAAATCGCTTATATTTGATGATATTTAAAGAGGGTAAGTTATTTTATAATTGCTCTAAGCATTCaacattactgtatttttgttgtaaGCAAAAATAACTTCCCTCCGTCACACTTGGTTTAGTTCTATTGCtcggttttcttttaaaaggggCAGACAGGCTTTTGCAGGCATCCAGTCATGACCTTGGTTTTCGTCGGGACAAAACATATTAGAAAGCCACTTCTGAGTCATATAAGCAGCCATCTGTGATAAAGACATCAATAAATGCATTCTGCAGGCCTTTCCCCTCACAGTAAAGTGCTTATGCATGCTTCATGCAATTTAGCTCTAAGCTTCTTGGATTTGAATATACATTTTGGATTATGTAATGTAAACTGTTACGCAATGCCAATAATAAAAGGGACCAGATGTAACGGGGATGATCTTGAATTTTATTTCTGGATTAGGCAAATGCTGCCGCTAAATATTTGGGATTCGGAAACCTTTTAATAAATCTCTGTGATTGTGCATGTCTCTTAGGCCTGCTCAGCAAATGTTTAAGTACTGCAGCGTGTCAGAACCTGTGTTGCCAGTTATGTTCAAGCATGATTCTCAGGTGTTGGTTTGTTGCAAATGCTAGAATGAAAATCCATAATCTATATCAAACTAACTTCAGTTGAAGGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155556 lncRNA upstream 49522 19283878 ~ 19284277 (+) True G124067
TU155524 lncRNA upstream 246644 19086135 ~ 19087155 (+) False AMCG00002562
TU155521 lncRNA upstream 249996 19082663 ~ 19083803 (+) False AMCG00002562
TU155467 lncRNA upstream 469834 18862678 ~ 18863965 (+) True G123997
TU155463 lncRNA upstream 472155 18844368 ~ 18861644 (+) True G123993
TU155588 lncRNA downstream 6889 19391123 ~ 19394724 (+) True G124094
TU155657 lncRNA downstream 777313 20161547 ~ 20161753 (+) True G124150
TU155676 lncRNA downstream 856351 20240585 ~ 20240879 (+) True G124165
TU155690 lncRNA downstream 975089 20359323 ~ 20359695 (+) True G124178
TU155746 lncRNA downstream 1177388 20561622 ~ 20562263 (+) True G124232
AMCG00002561 mRNA upstream 200232 19130067 ~ 19133567 (+) True AMCG00002561
AMCG00002562 mRNA upstream 205852 19073693 ~ 19127947 (+) True AMCG00002562
AMCG00002553 mRNA upstream 523420 18799860 ~ 18810379 (+) True AMCG00002553
AMCG00002546 mRNA upstream 875009 18457051 ~ 18458790 (+) True AMCG00002546
AMCG00002540 mRNA upstream 987601 18337756 ~ 18346198 (+) True AMCG00002540
AMCG00002564 mRNA downstream 22824 19407058 ~ 19410399 (+) True AMCG00002564
AMCG00002571 mRNA downstream 645924 20030158 ~ 20033860 (+) True AMCG00002571
AMCG00002572 mRNA downstream 845493 20229727 ~ 20238940 (+) True AMCG00002572
AMCG00002573 mRNA downstream 857614 20241848 ~ 20333030 (+) False AMCG00002573
AMCG00002574 mRNA downstream 986309 20370543 ~ 20396006 (+) True AMCG00002574
TU155541 other upstream 201441 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 495268 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 1349069 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 2373717 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 6204102 13125378 ~ 13129697 (+) True AMCG00002393
TU155679 other downstream 889855 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 3683890 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 3768414 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 4293701 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 5038018 24422252 ~ 24422613 (+) True G124863

Expression Profile