RNA id: TU155657


Basic Information

Item Value
RNA id TU155657
length 207
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G124150
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 20161547 ~ 20161753 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gatctgcctcgtctaaacccatgttgactatctccaagaatatggttttcattaagatgctcctctattttctgtctaatcattttgtccaacattttacaggtgatgcaggtgagactgattggtctgtaatttcctggctcagttttgtcccctttcttgtggattggtatgacatttgctgtcttccagtcagttggcacatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155588 lncRNA upstream 766823 19391123 ~ 19394724 (+) True G124094
TU155559 lncRNA upstream 777313 19333799 ~ 19384234 (+) True G124070
TU155556 lncRNA upstream 877270 19283878 ~ 19284277 (+) True G124067
TU155524 lncRNA upstream 1074392 19086135 ~ 19087155 (+) False AMCG00002562
TU155521 lncRNA upstream 1077744 19082663 ~ 19083803 (+) False AMCG00002562
TU155676 lncRNA downstream 78832 20240585 ~ 20240879 (+) True G124165
TU155690 lncRNA downstream 197570 20359323 ~ 20359695 (+) True G124178
TU155746 lncRNA downstream 399869 20561622 ~ 20562263 (+) True G124232
TU155851 lncRNA downstream 963262 21125015 ~ 21170354 (+) True G124331
TU155889 lncRNA downstream 1492029 21653782 ~ 21654725 (+) True G124364
AMCG00002571 mRNA upstream 127687 20030158 ~ 20033860 (+) True AMCG00002571
AMCG00002564 mRNA upstream 751148 19407058 ~ 19410399 (+) True AMCG00002564
AMCG00002565 mRNA upstream 776246 19367316 ~ 19385301 (+) True AMCG00002565
AMCG00002561 mRNA upstream 1027980 19130067 ~ 19133567 (+) True AMCG00002561
AMCG00002562 mRNA upstream 1033600 19073693 ~ 19127947 (+) True AMCG00002562
AMCG00002572 mRNA downstream 67974 20229727 ~ 20238940 (+) True AMCG00002572
AMCG00002573 mRNA downstream 80095 20241848 ~ 20333030 (+) False AMCG00002573
AMCG00002574 mRNA downstream 208790 20370543 ~ 20396006 (+) True AMCG00002574
AMCG00002575 mRNA downstream 250083 20411836 ~ 20426798 (+) True AMCG00002575
AMCG00002576 mRNA downstream 295990 20457743 ~ 20463329 (+) True AMCG00002576
TU155541 other upstream 1029189 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 1323016 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 2176817 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 3201465 16958161 ~ 16960082 (+) True AMCG00002500
TU154081 other upstream 7031850 13125378 ~ 13129697 (+) True AMCG00002393
TU155679 other downstream 112336 20274089 ~ 20276255 (+) True AMCG00002573
TU156269 other downstream 2906371 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 2990895 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 3516182 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 4260499 24422252 ~ 24422613 (+) True G124863

Expression Profile