RNA id: TU155844


Basic Information

Item Value
RNA id TU155844
length 1644
lncRNA type inter_gene
GC content 0.47
exon number 8
gene id G124327
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 20979097 ~ 21116735 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAGCGGCGCCGgggctttgttgttgtttagttgCGTGAGGGCGGGACTGCGCCGAAACCAGCAAGGCGCGGCCAGATCCCCTTCACACGTGCAGACAAAGAGACCTGACAACATACCCCAAATACTCCACTAGAAACTTTTTCAGGGACGTTGACGGCTTGCCAGTGTACTTGTGTTTTCCCGATTTAAGCCGCACTTTGTTGATACTGTGGTGAGTTGGGATTTAATTCAAGTTTGTAGACTTTTTTTGGAAGGAAAAGTTGCTTGGAGTTGGTGCGTCAGGCTGCAAAGTTACGCACAAAGCGCAGAGGAGCGTTCCTTTGTTCTGCGCAGGGCTTTGAAGGGAGATCATGGCAGGATCACCGCAGTTATCCTTTCCTcaaactgctttttaaattcCCTAGAAGCCGCAGAAAAGCGATGGAAAGCGTGCATTTGCATGGCTTTTTGCAAACTGCTGCAGAAGACACTCCAAAAAGGACACTTTTTTGATGAGGATTAATTTGGTGGATTTACAGAAAGCTCCACTACGCAGTCTACTGGGACAACTACTATATGGAATTGTGGAGAAGGCTTTTCCCGGAtttcttttgtatatattttttcaaaaccatGGGAATTATGACCATTGGAATTaccaataaaaggaaaaaaaagaaaaaaaaaactggattaCAATATTCTTCACGCCCTGGAGTGGATTAAAATCTttgaatatttaacttttttttgtcctcCAAAACACATCCCAAGATCACTGAGGGACAGAGCAGAGAGACCTCCCAGGAGGAAACTgtgaAATGGAAGAAATGACCAGTAAGAAGGGAACTCTTGCTGAGGGAAATATTTATGCTAAATGTGTAACTGAgGTGGAGACGggctggaaagaaaaaaggaaccAGCAGACCTGAATGGATCATATTCATGGCAACTCCCACGTGTGACTGACTCGGCTTACTAACCACATGCTAGTGCTGAACTCCCGGCAGCTGGACCTTAGTGAAACTTAGAAGGCTCTGATCAGTACGGGAAGAGGCTGGATTGGCTTCTTCTGAGACATGGAGAAAGCAGAGTAGAGAACGAAAGACCTTCAGCGAAACAATCGGGGAATTCTAGGAGTCATGGAGTCACCCTTGGCACCGCACCTTCCTACGCCCAGCACATTCCACGCTGATTCTTCCAAAATAACGTGGCGAATTGGACCCTTTCTCACCAACCACTCAACTCAGCTCCTCATCCAGACCCTGTTACTCTTTCGCCTGGATCACCAcagctccctcctggctggcctgcttGTATCTGCCACCCATCTGTTCCAGCTGCCTCGAGACTCTCATCTCTTCTTACgctccctccagaccactctgGTCTTCCTGCCGGCTCCTTCAACACCCCTGCCTCTAAGTGATTGAACAACCTACCCTCCGAGGTCAGGACTACAGTCTGCTCAAGACACGCCTGTTAAGACGACGTGTAATATGGCACCCAACATCTCCTGGACGTCTTGGCCCTTTCATACGCCATCTGATTGAACTGAAGTGCTCGTTTGTGATCttgattacttatgtatttaagcatttttaataatcttaCGGTAACTACTTCTGTATTTATGACTACCCTACCCCTCAATACACACCA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03430 Mismatch repair
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155736 lncRNA downstream 438574 20540307 ~ 20540523 (-) True G124222
TU155687 lncRNA downstream 644643 20302072 ~ 20334454 (-) True G124175
TU155557 lncRNA downstream 1694804 19283878 ~ 19284293 (-) True G124068
TU155446 lncRNA downstream 2196731 18782145 ~ 18782366 (-) True G123981
TU155412 lncRNA downstream 2393167 18584709 ~ 18585930 (-) True G123961
TU155898 lncRNA upstream 530320 21647055 ~ 21678545 (-) True AMCG00002584
TU155935 lncRNA upstream 678038 21794773 ~ 21794988 (-) True G124402
TU155964 lncRNA upstream 784930 21901665 ~ 21902223 (-) False AMCG00002596
TU155965 lncRNA upstream 801965 21918700 ~ 21918915 (-) True G124429
TU155967 lncRNA upstream 808872 21925607 ~ 21925856 (-) True G124431
AMCG00002578 mRNA downstream 466168 20505594 ~ 20512929 (-) True AMCG00002578
AMCG00002580 mRNA downstream 613898 20359557 ~ 20365199 (-) True AMCG00002580
AMCG00002579 mRNA downstream 704647 20269560 ~ 20274450 (-) True AMCG00002579
AMCG00002570 mRNA downstream 1135480 19838384 ~ 19843617 (-) True AMCG00002570
AMCG00002569 mRNA downstream 1435292 19522852 ~ 19543805 (-) True AMCG00002569
AMCG00002583 mRNA upstream 10379 21127114 ~ 21128253 (-) True AMCG00002583
AMCG00002586 mRNA upstream 239197 21355932 ~ 21360543 (-) True AMCG00002586
AMCG00002585 mRNA upstream 527625 21644360 ~ 21645046 (-) True AMCG00002585
AMCG00002584 mRNA upstream 535158 21651893 ~ 21669222 (-) False AMCG00002584
AMCG00002589 mRNA upstream 642098 21758833 ~ 21778461 (-) True AMCG00002589
TU155250 other downstream 2989632 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 4139375 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 6032786 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 7324861 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 7949691 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 1969259 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 2065186 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 3144830 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 3175052 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 5187147 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile