RNA id: TU155889



Basic Information


Item Value
RNA id TU155889
length 261
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G124364
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 21653782 ~ 21654725 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGGGCACTTCCAACTTAGTCTCCGAGGGAGCTTTCACCGCGATCACAGTCTGATCTCTGAAGCTCCGGATCCTTCGGATGTCCTGATACGTTACGTACGCAAATTTCTGGTTGTGCGTCTCCTCGGTGAGCTGCCGAACATCAAGGGTGCAGTTCTGAATGAGCTCGTCCAGCCTTTTCTCTTCCTGGCTCAGCTCAGCCACCTCCCTGCTCAGGCTCTGGCAGCGGTTCAGAGTCCCCCCATCATCTGACAGATTGCAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU155851 lncRNA upstream 483428 21125015 ~ 21170354 (+) True G124331
TU155746 lncRNA upstream 1091519 20561622 ~ 20562263 (+) True G124232
TU155690 lncRNA upstream 1294087 20359323 ~ 20359695 (+) True G124178
TU155676 lncRNA upstream 1412903 20240585 ~ 20240879 (+) True G124165
TU155657 lncRNA upstream 1492029 20161547 ~ 20161753 (+) True G124150
TU155936 lncRNA downstream 140269 21794994 ~ 21795202 (+) True G124403
TU155939 lncRNA downstream 140590 21795315 ~ 21795957 (+) True G124405
TU155942 lncRNA downstream 150895 21805620 ~ 21810821 (+) True G124408
TU156041 lncRNA downstream 679224 22333949 ~ 22337958 (+) True G124494
TU156090 lncRNA downstream 782224 22436949 ~ 22438781 (+) True G124534
AMCG00002582 mRNA upstream 583286 21054506 ~ 21070496 (+) True AMCG00002582
AMCG00002581 mRNA upstream 599626 21021936 ~ 21054156 (+) True AMCG00002581
AMCG00002577 mRNA upstream 784826 20687350 ~ 20868956 (+) True AMCG00002577
AMCG00002576 mRNA upstream 1190453 20457743 ~ 20463329 (+) True AMCG00002576
AMCG00002575 mRNA upstream 1226984 20411836 ~ 20426798 (+) True AMCG00002575
AMCG00002587 mRNA downstream 20346 21675071 ~ 21693525 (+) True AMCG00002587
AMCG00002588 mRNA downstream 44961 21699686 ~ 21742911 (+) True AMCG00002588
AMCG00002590 mRNA downstream 157853 21812578 ~ 21815488 (+) True AMCG00002590
AMCG00002598 mRNA downstream 496071 22150796 ~ 22156021 (+) True AMCG00002598
AMCG00002599 mRNA downstream 587552 22242277 ~ 22254740 (+) True AMCG00002599
TU155679 other upstream 1377527 20274089 ~ 20276255 (+) True AMCG00002573
TU155541 other upstream 2521424 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 2815251 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 3669052 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 4693700 16958161 ~ 16960082 (+) True AMCG00002500
TU156269 other downstream 1413399 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 1497923 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 2023210 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 2767527 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 4620866 26275591 ~ 26278973 (+) False AMCG00002684

Expression Profile