RNA id: TU156091


Basic Information

Item Value
RNA id TU156091
length 1844
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G124535
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22436886 ~ 22438729 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACTTTCGTACGACACACTCAAATAAGTATTACCACTAACCATGAAAATAAGGTAATGAAAACCATTTATTACAATATACTCTTCAGTCATGAAAATGAGCAGTGTAATCTTATTACACCTAGACAAGTGtgtaccagaaaaaaaaaaactacacaaatGTAATCGCACAATGATTATGAAACACCTGAGTAACACAACTGAATTAAACATAATCAGCCGTTTTTGTTGATGTAGTTCCTttaagcaaaaaaagaaaccaggTTTAATTAAGTTAAGTAGTTTAATAAAATGCCTGTAGATTTACATGTAACTATACTATCTGTTCTGCATTATAAAATGTGGATTGGTACATCCCACACTCTTCCATTGTCCTGATTTAAAGGAAGGCAAAGACAATCATCTTGAAATTTAGTTGCATTTGTAGTCAGCTGTTATGGCTTTAAAAATTCAAGTGCTatattaacatactgtatactCCCAAACATCTCAGAAAAAGTATAGTAGTCCCTTTTTAGGATAAGCTAAAGTTTAAAGATTTTTATCTTTTACTTAATAAAGCtaaaacagaagcagaaaaaacGTGTCAGGTGAGCAAAATCACAGtcagaatttaatttaagaaaaaaacattgtttcaaacaTTAATTGTGTAGCATAAAAATTACCATTGATTGTCCATGgttttcttgcatttaaaaaaggcattttcttATGCAACGTAAagttttaaactaaacaaatattgtCAAGCTTATTGCCACAGAGCAAAACCAGTCTCCAATTGTCTGGATAGTAACAGACAGTgccattttagaaaaataaatcggGTGAATATATTTCACTTGAACTTCAAAGAATTCCCTGGATTTTATTTGGAGGTTGAAAAAGTAGAGACAAATTTGGTGCTGTGGCAAAAAACCTTAGAAGCTTTCCTGGTAACAGTTTAAGAAATGTGTCTTTTGGCAATGAACATATTGGCCAGCACACCAGTAATGTAAAGCAGTATTAAGGCATAGTTTTATACCTGTACTGAGTCAAGCAAGGTGCATGTTAGCATCAGTTGCTCTTCTGTATGTAAGGCTGTTGCTGCTTTTTCTTACTGCTTGTCAATAGACACtttcccaaaaaaaaaaaatctctaaaataaaacaatagcatTATCAGTACCCTTATTCTCAGCAGCATTGTAATCACAAATGAACATGAAATATTTAATGACAGGTTTATTCAATCACAGTAGATTATTAGGGGAGAGATATGACAGGCAATGTTGCATGtaagggaaaaataataatacaacaaatattgGACACACAATTATGAGAACTGGTGTTcaacatttgtcatttgttgGCAAGTCCCCTGAAAAGAGACAAACCTGTGAACGTGAATTCAGTTcagttaagaaaacaaaatagcttAAGAACTGTTTGTGTGCGCTTTACAGCTGTCCTTGATGAAAAGCATGCACTGACTTACAGACTGCTTTCCTTTCAAacaagtttttttgtgtgtccccgaattgtttttcatattgacTAGTACTGTACTTCAGCAAATTCTGTTCTTCATAATTCTCAAGAGagaaatgcatttgaagaagtcggttgaaaattaaatgtgaagtGTATGAAAGAACACCATGGTTTTGTTCCCCCATGAATGATGTAAGTGTTTGTAAACATCTTTGTTTTATGACTTTATAACTtgttgtataatgtatatatacattacataaacatgtttcggtatattatatatagctttgtgtgaatgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatgtagcacTTGCGAAAAT

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155970 lncRNA downstream 483215 21941177 ~ 21953671 (-) True G124434
TU155967 lncRNA downstream 511030 21925607 ~ 21925856 (-) True G124431
TU155965 lncRNA downstream 517971 21918700 ~ 21918915 (-) True G124429
TU155964 lncRNA downstream 534663 21901665 ~ 21902223 (-) False AMCG00002596
TU155935 lncRNA downstream 641898 21794773 ~ 21794988 (-) True G124402
TU156148 lncRNA upstream 159270 22597999 ~ 22598555 (-) True G124582
TU156157 lncRNA upstream 214753 22653482 ~ 22653719 (-) True G124591
TU156251 lncRNA upstream 558090 22996819 ~ 22999108 (-) True G124669
TU156319 lncRNA upstream 699889 23138618 ~ 23296115 (-) False G124719
TU156386 lncRNA upstream 1217255 23655984 ~ 23663572 (-) True G124765
AMCG00002606 mRNA downstream 47501 22381544 ~ 22389385 (-) True AMCG00002606
AMCG00002605 mRNA downstream 56094 22354118 ~ 22380792 (-) True AMCG00002605
AMCG00002603 mRNA downstream 88382 22323186 ~ 22348504 (-) True AMCG00002603
AMCG00002602 mRNA downstream 113836 22302321 ~ 22323050 (-) True AMCG00002602
AMCG00002597 mRNA downstream 218878 22178932 ~ 22218008 (-) True AMCG00002597
AMCG00002608 mRNA upstream 122388 22561117 ~ 22568988 (-) True AMCG00002608
AMCG00002610 mRNA upstream 159895 22598624 ~ 22620244 (-) True AMCG00002610
AMCG00002611 mRNA upstream 255477 22694206 ~ 22705745 (-) True AMCG00002611
AMCG00002616 mRNA upstream 470461 22909190 ~ 22926813 (-) True AMCG00002616
AMCG00002615 mRNA upstream 516547 22955276 ~ 22958920 (-) True AMCG00002615
TU155250 other downstream 4447421 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 5597164 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 7490575 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 8782650 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9407480 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 647265 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 743192 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1822836 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1853058 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3865153 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile