RNA id: TU156247


Basic Information

Item Value
RNA id TU156247
length 445
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G124666
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23001788 ~ 23002232 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACAAAGGATTTGTTCAATTTCCTCCAGGAACTCTTCTGCAGTCAGATCGGCATACACGCTGAGCGTCTTCACTCTGTCACCTGTATTGCAGGCGATTTTCTCCAAAGACTGTCTTTCTGCACTGGTGTCAAACATGTCGCCAATTGCAATGGCGTACACCTCCACTCCTTTGCAAAGGGCTTCCAGGTTGTCCACGTCTTTGGGGTCGTAACGTCCGTCTGTTATGACAATGGCCACCACCTTGGTGCGCAGTCGTCTCCCTGGCATTATCAGGTTATCGTAGGTGAACTTCAGGGCAGAGGGTGTCCATGTCCCCCCGGCTATCCACTCCATTGCTTTGACTTTGGCTTTGAAACTGGTGATCGATGTTACATCCGGATCATCCATCCGTATCGCCTGTACAGCATCCTGATGGCTGTACTGCACTACCCCCAGCCGGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156237 lncRNA upstream 10028 22990571 ~ 22991760 (+) True G124658
TU156235 lncRNA upstream 11690 22987545 ~ 22990098 (+) True AMCG00002622
TU156236 lncRNA upstream 11690 22987545 ~ 22990098 (+) False AMCG00002622
TU156173 lncRNA upstream 89109 22859923 ~ 22912679 (+) True G124601
TU156156 lncRNA upstream 348846 22652726 ~ 22652942 (+) True G124590
TU156248 lncRNA downstream 759 23002991 ~ 23003252 (+) True G124667
TU156249 lncRNA downstream 9203 23011435 ~ 23012000 (+) True G124668
TU156273 lncRNA downstream 216098 23218330 ~ 23276775 (+) True G124687
TU156357 lncRNA downstream 419741 23421973 ~ 23436320 (+) True G124740
TU156369 lncRNA downstream 604305 23606537 ~ 23606839 (+) True G124750
AMCG00002621 mRNA upstream 2303 22996873 ~ 22999485 (+) True AMCG00002621
AMCG00002622 mRNA upstream 11624 22987622 ~ 22990164 (+) False AMCG00002622
AMCG00002613 mRNA upstream 49960 22947203 ~ 22951828 (+) True AMCG00002613
AMCG00002612 mRNA upstream 55867 22927289 ~ 22945921 (+) True AMCG00002612
AMCG00002618 mRNA upstream 95276 22904029 ~ 22906512 (+) True AMCG00002618
AMCG00002619 mRNA downstream 26404 23028636 ~ 23033585 (+) True AMCG00002619
AMCG00002624 mRNA downstream 41592 23043824 ~ 23055716 (+) True AMCG00002624
AMCG00002620 mRNA downstream 54550 23056782 ~ 23067800 (+) True AMCG00002620
AMCG00002623 mRNA downstream 66401 23068633 ~ 23073698 (+) False AMCG00002623
AMCG00002630 mRNA downstream 405334 23407566 ~ 23407966 (+) True AMCG00002630
TU155679 other upstream 2725533 20274089 ~ 20276255 (+) True AMCG00002573
TU155541 other upstream 3869430 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 4163257 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 5017058 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 6041706 16958161 ~ 16960082 (+) True AMCG00002500
TU156269 other downstream 65892 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 150416 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 675703 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 1420020 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 3273359 26275591 ~ 26278973 (+) False AMCG00002684

Expression Profile