RNA id: TU156249



Basic Information


Item Value
RNA id TU156249
length 566
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G124668
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23011435 ~ 23012000 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTTAACCGCCAGTTGCCTCCGGTTTTTTGGGAAGGCCAAGTAATCCTTGCGGTAAAGCTCGACGGGAGAACTTGCGATCTGTTTTAGTTCGCTCTCCATCGTGTCATCGCTGGTCGCCACCACAAAGATCTTAATGCCTGCAGCTTTGGCTGCTTCAGTGGCCTGCTGGACTCCTCCACAGGGGTTCCCTGTGATATGCCCGTCGGTCAAGACCACGGCGAACTGTAGCTGCGGCTTCACTGAGGAGTACGCTTTCCGGACCTGATCCGTCAGGTTCCTCAGGGCGCAGTCCAGGAAGGTCCCTCTTCCGATGTACCTGATATTTCTCACCCTCGTCAGGAAGGCAGTGGTGTCGGTAGTTATCTGACTGAAGACCTCAACCCGGTCTGAGAAATGCAGTCCCCCGAAGGACCATTTCACCTTCTTGGCTTGCAGGGTGCTCCCCTGCAGCTTCTGCACAAACATCTCGAGGAACACTTTCAGCTCGTCCACCTGGCTGCCCCAGGGATACTCCTTGAGTGCCACGCTCTCTGAGGTATCCACGGTGAAGTATACGTTGATAGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156248 lncRNA upstream 8183 23002991 ~ 23003252 (+) True G124667
TU156247 lncRNA upstream 9203 23001788 ~ 23002232 (+) True G124666
TU156237 lncRNA upstream 19675 22990571 ~ 22991760 (+) True G124658
TU156235 lncRNA upstream 21337 22987545 ~ 22990098 (+) True AMCG00002622
TU156236 lncRNA upstream 21337 22987545 ~ 22990098 (+) False AMCG00002622
TU156273 lncRNA downstream 206330 23218330 ~ 23276775 (+) True G124687
TU156357 lncRNA downstream 409973 23421973 ~ 23436320 (+) True G124740
TU156369 lncRNA downstream 594537 23606537 ~ 23606839 (+) True G124750
TU156392 lncRNA downstream 670013 23682013 ~ 23682226 (+) True G124770
TU156396 lncRNA downstream 817670 23829670 ~ 23829984 (+) True G124774
AMCG00002621 mRNA upstream 11950 22996873 ~ 22999485 (+) True AMCG00002621
AMCG00002622 mRNA upstream 21271 22987622 ~ 22990164 (+) False AMCG00002622
AMCG00002613 mRNA upstream 59607 22947203 ~ 22951828 (+) True AMCG00002613
AMCG00002612 mRNA upstream 65514 22927289 ~ 22945921 (+) True AMCG00002612
AMCG00002618 mRNA upstream 104923 22904029 ~ 22906512 (+) True AMCG00002618
AMCG00002619 mRNA downstream 16636 23028636 ~ 23033585 (+) True AMCG00002619
AMCG00002624 mRNA downstream 31824 23043824 ~ 23055716 (+) True AMCG00002624
AMCG00002620 mRNA downstream 44782 23056782 ~ 23067800 (+) True AMCG00002620
AMCG00002623 mRNA downstream 56633 23068633 ~ 23073698 (+) False AMCG00002623
AMCG00002630 mRNA downstream 395566 23407566 ~ 23407966 (+) True AMCG00002630
TU155679 other upstream 2735180 20274089 ~ 20276255 (+) True AMCG00002573
TU155541 other upstream 3879077 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 4172904 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 5026705 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 6051353 16958161 ~ 16960082 (+) True AMCG00002500
TU156269 other downstream 56124 23068124 ~ 23180043 (+) True AMCG00002623
TU156281 other downstream 140648 23152648 ~ 23290535 (+) True G124689
TU156391 other downstream 665935 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 1410252 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 3263591 26275591 ~ 26278973 (+) False AMCG00002684

Expression Profile