RNA id: TU156251


Basic Information

Item Value
RNA id TU156251
length 641
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G124669
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22996819 ~ 22999108 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAACATTTATTACGAGCGAGAAATCGACACATTCAGTACTGAGTAAACCAGGATGGACGCTTCCTTTTTGTCTCTACGATTCTTTTCCCCTCGTCCACCTCGCTGGGCTTCTCGTTCTCGTACAGAACGACAGTCTCCACATGCGGGCTGTTAAAGGGCTTTTCTTCCATCGCCTGGATCTGTCCTCGAATCAAAGCCGTCTCCCTCCGTACTCTCTCATAGCAGAAACCGCACAACACGTGCTTCAGTTTTAGATGCCCGCATTCTGGGCATGGCACAATATTTCTTAATTGGGATGAGATTGGCAGGGTTTCGTCTGCGGCAGCGGTTTACTTCAATGGTGCGTCTCTTCTTGGGAGCAGCCATCCAGAAAATGTTATCCAGAAAACTGGGAACTTCATCCTGTTCAAGTGTGGACTTGGGCTGGGGGAGGAGACAGGGACCCTGTACAGCCAAAGCGGGGACTATAAACCAAACCAAATTCCTCTCAAACCCCACAGTCTGAAGAACTCGCTGTTCAAAGCTTATCAATGAACGTCTCAAAAAACAGATAAACCCCGCCACACTCATTTTCATCTCCCCTACCTACCCCCCGACTAAAGTTAAAGCATGTCAGGGTCACACATGCACTGCGACTGC

Function

GO:

id name namespace
GO:0044249 cellular biosynthetic process biological_process
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0019843 rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156157 lncRNA downstream 343100 22653482 ~ 22653719 (-) True G124591
TU156148 lncRNA downstream 398264 22597999 ~ 22598555 (-) True G124582
TU156091 lncRNA downstream 558090 22436886 ~ 22438729 (-) True G124535
TU155970 lncRNA downstream 1043148 21941177 ~ 21953671 (-) True G124434
TU155967 lncRNA downstream 1070963 21925607 ~ 21925856 (-) True G124431
TU156319 lncRNA upstream 139510 23138618 ~ 23296115 (-) False G124719
TU156386 lncRNA upstream 656876 23655984 ~ 23663572 (-) True G124765
TU156401 lncRNA upstream 874570 23873678 ~ 23928150 (-) True G124779
TU156515 lncRNA upstream 1411921 24411029 ~ 24411336 (-) True G124873
TU156550 lncRNA upstream 1577057 24576165 ~ 24577131 (-) True G124907
AMCG00002628 mRNA downstream 299 22990253 ~ 22996520 (-) True AMCG00002628
AMCG00002617 mRNA downstream 10248 22971505 ~ 22986571 (-) True AMCG00002617
AMCG00002614 mRNA downstream 28126 22959715 ~ 22968693 (-) True AMCG00002614
AMCG00002615 mRNA downstream 37899 22955276 ~ 22958920 (-) True AMCG00002615
AMCG00002616 mRNA downstream 70006 22909190 ~ 22926813 (-) True AMCG00002616
AMCG00002627 mRNA upstream 1619 23000727 ~ 23012696 (-) True AMCG00002627
AMCG00002626 mRNA upstream 19838 23018946 ~ 23028347 (-) True AMCG00002626
AMCG00002625 mRNA upstream 34700 23033808 ~ 23036859 (-) True AMCG00002625
AMCG00002629 mRNA upstream 182823 23181931 ~ 23192656 (-) False AMCG00002629
AMCG00002632 mRNA upstream 422690 23421798 ~ 23471546 (-) True AMCG00002632
TU155250 other downstream 5007354 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 6157097 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 8050508 14941260 ~ 14946311 (-) True G123263
TU154299 other downstream 9342583 13649228 ~ 13654236 (-) False AMCG00002421
TU154047 other downstream 9967413 13028197 ~ 13029406 (-) True G122862
TU156333 other upstream 86886 23085994 ~ 23153164 (-) True G124719
TU156342 other upstream 182813 23181921 ~ 23185168 (-) True AMCG00002629
TU156457 other upstream 1262457 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 1292679 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 3304774 26303882 ~ 26305923 (-) False AMCG00002688

Expression Profile