RNA id: TU156281


Basic Information

Item Value
RNA id TU156281
length 1896
RNA type TUCP
GC content 0.44
exon number 2
gene id G124689
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23152648 ~ 23290535 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTCTAGATCTCCTGATGACTGGCAGCAGCTTCACACAGCCTTCTTCTGTTCTGCTGAACTTCCTCAAGTCAAACTCATCTAACGACTCTTCTGATGTCAGCAGCACAAACACCAGTGCTGACCACTGTTCAGATGAGAGCTTTCTTCCTGAATGACTTCCTGAGCTCAGGAAGCTCTTGATTTCTTCCACTAGAGAATTATCATTCAGTTCATTTAAACAGTGGAACAGATTGATGCATCTCTCTGGAGACTTATCCTTCTTAATCATCTTCTTAATGTAATCAGCTGTGTCCTGGATGCTCTGGGAAATGCTCTTTGGCTCTGTCAAAAATTCACTCCACGAGCTGCTGATTGTGCTTAACAGCCATCCTCTCCATGAGCTGCTGTGTGTCGGTGTCAGTAGTTCTCTGTGTGAGCTGCTGTGTGTCAGGAGGCCTCGTAAGAGAGTCTGATTGGACTCCATTGAGATGCCCAGAAGGAAACGGAGGAAAAGATCCAGGTGTCCATTCTTACTCTGTAAAGCCTCATCCACTGCACTCTTGTACAAGTCTGACAATTTCACTGTCTTGTCATTTGTATGCTTTTTGTTAAatagatttagattttcatttttatatgagAAAAAGACATGCAAAGCAGCAAGATATTCCTGAATGCTCAGGTGTACAAAGCAATACACTTTTTGCTTGAATATTGCTGATTCCTCTTTAAATATCTCTGTGCACACCCCAGAGCACACTGAAGCTTCACTGACATCAATGTCGCACTCTCTTAAGTCTTCTTTATAAAAAATCAGATTGCCATTTTGAAGGTGTTTAAAGGCCAACTTGCACAGTTTCAGGATATTGTCCTTCTCTGACTCTAACAGGTTCTGTGTGCTTTCCTCAGTTCCACAAAGATACTTCTTATTCTTGATACTGATCAGAAGGAGCAGGAAGTGTGTGTACATTCCAGTCAGAGTAGTTGGGATGACTCCACTGCTCGCCTCTCCCAACATTCGCTGCAGAACAGTGGCTGAGATCCAGCAGAAGACTGGTATGTGGCACATGATGTGGAGGCTCCTTGATGACTTGATGTGTGTGATAATGGCCCTGGCCAGGTTCTGATCACTGACTCTCTTCCTAAAGTACTCCTCTTTCTGCTCATCATTGAACCCTCGAACCTCCGTCACCTGGTGGACGCACTCGGCAGGGATCCGACTGGCCGCTGCTGGCCGGGAGGTTATCCAGAggagagcagagggaagcagatTTCCCCTGATGAGGTTTGTCAGCAACACATCCACAGACATTGACTGTGTCACATCATGACACATCTGATTGTTCTGGAAATCCAAGGAAAGACGGCTCTCATCCAGGCCATCAAAGATGATCAAAACTGTGTATTTACCAGACTCAAGATCTCCAGCCTCTTTCAGTTCAGGGTGGTAGTAGCACAGAAGTTCAATCAGATTATATCTTTCTTTCCTCATCAAATTCAGGCCACGAAAAGGCAGAAAGAATATGAAGTGAATATCCTGATTAGCTTCTCCAGTTGCCCAGTCAAGGATGAACTTTTGCACAGACACTGTTTTTCCAATGCCAGCAATCCCCTTCGTCAACACAGTTCTGATTTGTTCTGACAGTTTTTCTTGCCCAGATAAgggtttaaaaatgtcattGCATTTGATTGGagtctcctgtgtgtgtttcttcttgATTGCCATCTCAATCTGCCTCACCTCATGTTCATTATTGACCTTTACACTGTCACCCTCTGTGATGTAGAGCTCTGTGTAAATACTATTGAGGAGGGTGCGCTTCCCTGACTCAGCTACGCCTTCAAAGATGCATTCAAACCTTTTCTTCAGGATGGATTTATGCTTCACTTGGACTGTTTTCAGTGATCCATCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156249 lncRNA upstream 140648 23011435 ~ 23012000 (+) True G124668
TU156248 lncRNA upstream 149396 23002991 ~ 23003252 (+) True G124667
TU156247 lncRNA upstream 150416 23001788 ~ 23002232 (+) True G124666
TU156237 lncRNA upstream 160888 22990571 ~ 22991760 (+) True G124658
TU156236 lncRNA upstream 162550 22987545 ~ 22990098 (+) False AMCG00002622
TU156357 lncRNA downstream 131438 23421973 ~ 23436320 (+) True G124740
TU156369 lncRNA downstream 316002 23606537 ~ 23606839 (+) True G124750
TU156392 lncRNA downstream 391478 23682013 ~ 23682226 (+) True G124770
TU156396 lncRNA downstream 539135 23829670 ~ 23829984 (+) True G124774
TU156405 lncRNA downstream 697167 23987702 ~ 24004361 (+) True G124783
AMCG00002623 mRNA upstream 78950 23068633 ~ 23073698 (+) False AMCG00002623
AMCG00002620 mRNA upstream 84848 23056782 ~ 23067800 (+) True AMCG00002620
AMCG00002624 mRNA upstream 96932 23043824 ~ 23055716 (+) True AMCG00002624
AMCG00002619 mRNA upstream 119063 23028636 ~ 23033585 (+) True AMCG00002619
AMCG00002621 mRNA upstream 153163 22996873 ~ 22999485 (+) True AMCG00002621
AMCG00002630 mRNA downstream 117031 23407566 ~ 23407966 (+) True AMCG00002630
AMCG00002631 mRNA downstream 362437 23652972 ~ 23677437 (+) True AMCG00002631
AMCG00002635 mRNA downstream 677043 23967578 ~ 23985386 (+) True AMCG00002635
AMCG00002637 mRNA downstream 706712 23997247 ~ 24007711 (+) True AMCG00002637
AMCG00002636 mRNA downstream 728969 24019504 ~ 24036531 (+) True AMCG00002636
TU155679 other upstream 2876393 20274089 ~ 20276255 (+) True AMCG00002573
TU155541 other upstream 4020290 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 4314117 18832014 ~ 18838531 (+) True G123989
TU155222 other upstream 5167918 17915436 ~ 17984730 (+) True G123807
TU154987 other upstream 6192566 16958161 ~ 16960082 (+) True AMCG00002500
TU156391 other downstream 387400 23677935 ~ 23681385 (+) True G124769
TU156498 other downstream 1131717 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 2985056 26275591 ~ 26278973 (+) False AMCG00002684
TU156956 other downstream 3071677 26362212 ~ 26369525 (+) True G125219

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00054777 True 7020 mRNA 0.38 2 NC_007115.7 67999732 ~ 68010973 (+)
grasscarp (Ctenopharyngodon idella) CI01000212_00330620_00334254.mRNA True 2275 mRNA 0.44 3 CI01000212 330620 ~ 334419 (+)