RNA id: TU156391


Basic Information

Item Value
RNA id TU156391
length 3451
RNA type TUCP
GC content 0.45
exon number 1
gene id G124769
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23677935 ~ 23681385 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACcacatcaaaattaaaatttcCAACAGTTCTGGAATTTTATTCCATCCATATACATGCATAGCAACAACGttgttaagatttttttttcttttttcattattaggACATTGGAATGATCATGTTACATTAgtgtccccccccctccccactcccCCATCTTGTTTAGCAACATCAATAAACTTCATTCTTGTAGAATTTCATTTTCATGGGATACAAAGAAAATCTGACGCACCGCCCTTTTCGTAATACTGCTTTCAGTAATGTTCTTTTAGAAAGTATTGCGTTGAGAGCAAAGTTTTAAAAAGGGAGACCGAAGGgcatcagcaaacaaaaatacaagtaCTATACAAGAACGCTGTCATCCTCATTAAAACATACAGTTCTGAATTTAAGAAAAGAGACGGGGACAAACAGCTACATACATATGCAAAGCCCAGTGACCAATGTATATGCTGAAATATAAGATGCAGGATTGTGCCTGGTGATCCCCCAAAACAGTGGTTTAAGGCAAGAAGTCATGAATTATAGCCGCAAATTATATTTACGCatatacaaaaaacagtaaCAGCAAATAAGATAGAAATACACAAGTGCTTTTGTAGCTATTCGtctaaaatgcatttcctgttttctgtgtctATTGTATCATTGAATCTACATTACAGTGTAAACAATGTGTGCTACACAAGAATGACtatacaataacattacaaacaaCTCTGAtataaatttattttcatttaaattaagatcACTACTCCTATTAATActgattgtaaaataaataaaagtatgtgAAAGTGGCACCAATATTACACTTGATTTTTACCGATGATTTGCATTAAGTCTTAAAGTAAGGAAAGAAGAAGCTTCTCTTGATTGTCCACAAGCAGCATATAAAACTGCATGATGCACTATTCCAGACACAACCGTGTaccaaaaaaacccaaaacaaacaaacaaacaaaaagaaagacaaaacttCATTTCACATGTTCTGCCGCATGTGAGGAGCAGTAAAACTTCTTGTGTGTAATAAAGTTCGACAGGTTGTTAAACTGAATATCACACAGGCGGCAATATTTGCCGCTGCCGGCAGCTTGGGCAGAGCCGTTTACACCTTTCGTTATGGTGGGCAGCGCTTCCTCTGGCGGCGACTTTATGGAAGGCGACACGTTTTCGTTGGCGTCAGCGGGGTTTTCCGATACCCAAGTCGGGGACGGGTGACTGTCTGGTTGCTGGGAGTTGTGGGGCAAGTTTTCCTGCTGCAAGGTAACGGAGCCAGACCTGTCCTCTGGCTTATGTCCTCCGTTCACTATTACCATGCCCCTGTTTTTAGGCAGCAGTGGCAGAGGTTCTTTGTTCGGGTGAGGACAGCCATTGGGCGCTGGCTGCTCTTTGACAGTGTCACTTCCTCCATTTGTGCTCTGATCCTGCTCGCTAGTTTCGCCCTGCATGACCAGACTGCCGGCAATGTAATCTGTGGGTTTTATCCCGTAGTACGGCGATATTTGCTCCGCCCCCTTCACTTTCTTTATTGCTCCAGGATAAAGGCAATGCGGCAGAAACAAATTCTTGTTCTCTTCTTTCGTGGAAATCAGCTGACTCTCACTGAATGCTTTCAGTCCGGGCAAGGTCCCTAAATGGGAGGAGAACAGGCTACCGTTTTGTGCGATCAGTTTGGCGCTCCCGTTTTTATCGCACTTTGCGGGGCTCTTGTCAAAGCTGTCGTCGGGATTATTGCCCTCGATTTTAATTTCTGGGAACATTGTTTGGTCCAGGTTGCTGATCTCATTGTGCTGGGGAGCTGTAACGGGGCAGAAGTTCTGTTTATGCGCTAGATAATTCTCCACTTTGTTAAAACTGATTTTGCACACTGTACATTCGTGATAGTCCAAAAGTCTTTTGGGAGAATTGCATGATTTTTCTGAATGAGGGGAGCATTTTTTACTGAGATCTATGGGGGCATCAAGTTCCTGGTGATCTAGCGTATTGCATTTAGGTGCCAGGACAGCTTTCGTGACAGTGAGCGAAGCTTCTAGATGTTTTGGAACCATCCCCGGAAACACATCACACCTGGGATGGAAACGATCCCCGAGATTCTCCGCGGCGTCTTGAGAAGTGCAGGGGCTGCCCAAAGACGGAACGCCCAGAAAGCCTGGCTGCCCCAGCTGAGGCCGTTGATCTTGATCTGGGAGACACATTTCGTACATCTTCCTCCGCTTGCGCGTGCGCATCGTCCTCTGCATTGCAGGCACTTTGTTCGCTGAAATGCGCTTCATTGGCGGGTCGTGCCGAGTCGCGCAGTAATACTGTTTGTGCACCACGTAGGTTTCGTGACGACTGAATGTGATATTGCAAGCTTCGCATGTCGTTTTGTTAGGGTCGTTTTCATTTTCCACTACAGATGTGCTTGGACTCTTCACCTCCGCTTGCTTCCCATTGAGCCTCTCATCGCTGCCAGTAGGAGTTGAAACTTTCTTAACTTGTCCAGGAAGTTCTTTCTCAGGCACTTTGCCGCTGGAATTGATCATGTCCAACACTGACGAGTTCAAACAAGCAGATTGAATAAGATGGCTGTCAGGATCTGAGGGATGGCAGACGGCGTTCAATATATTGACCGAACTATGGCCGCTGTTTGGGCTTACTGCTTCTGTCACCTTTTCTGAGACGCTGGAGAAATCGGGTGACTTGGCCATGTGTTGCCAGCGGCTGTTACAGTAGTGCTTTTTATGGACTAAGTAGTTGTCCAAGTTGTTGAAGGTGATATTGCATTCAAAACAGGTAGCCCCCTTTGGCATGAGGGGGCTATAGATCACTGGAGGGTAGCTACTCCCTCCGTGTCTTAACCTACGATGGACCAGCTCTGACATTTTCGCAAGTATCTCTGAAGCTTGAGGGACCACTGAAATGTCCTGGGAGAAAGCAAACTGGGACAGAAAAGGTCCCATGGGGAATGTAGGCCCAATATTGGGTTGCACTGGAGATGAAGCCAGTCTTGGGCTTGATGGCTCTGACTTGATCCTTGTATATGAAAAACTGGCCTTATTACCCAGGTGTGTCTCTCCCTTCTGATTAGACAGCGTGGGCTTCTTCTCTGGCTTTTCCAGCTCTGCGTCCGAGTTCATGTCCTTGTTCTGTGCGCTTTTGGGACTCTGGAGGACATCCTTCCTGTTTCCCAGCTCGGCTCTCGCCTGCTGCAGGTTTTCTTCGTTGCCTCTGGGGGAGTGTTCACTGTCGCTCTCTCTGTGAAGTTTGCTGCTGTGCCCGTGTAATTCCTGATGCTGCAAGAGTTCCCTGTGGTTTTGGAAGCTGATATGGCAGTGATTGCATCTGAAGGCAGCCTGTGACAGGTGAGAGAGGATGTGGTGCTGGAATGTAATAAGAGAATCTGCTGTGTAGTTACAGATTGTGCATTTCAAGCTGGTGCCAGGAGGGAGAGTCTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156369 lncRNA upstream 71096 23606537 ~ 23606839 (+) True G124750
TU156357 lncRNA upstream 241615 23421973 ~ 23436320 (+) True G124740
TU156273 lncRNA upstream 401160 23218330 ~ 23276775 (+) True G124687
TU156249 lncRNA upstream 665935 23011435 ~ 23012000 (+) True G124668
TU156248 lncRNA upstream 674683 23002991 ~ 23003252 (+) True G124667
TU156392 lncRNA downstream 628 23682013 ~ 23682226 (+) True G124770
TU156396 lncRNA downstream 148285 23829670 ~ 23829984 (+) True G124774
TU156405 lncRNA downstream 306317 23987702 ~ 24004361 (+) True G124783
TU156445 lncRNA downstream 580163 24261548 ~ 24261841 (+) True G124823
TU156459 lncRNA downstream 597049 24278434 ~ 24278640 (+) True G124831
AMCG00002631 mRNA upstream 498 23652972 ~ 23677437 (+) True AMCG00002631
AMCG00002630 mRNA upstream 269969 23407566 ~ 23407966 (+) True AMCG00002630
AMCG00002623 mRNA upstream 604237 23068633 ~ 23073698 (+) False AMCG00002623
AMCG00002620 mRNA upstream 610135 23056782 ~ 23067800 (+) True AMCG00002620
AMCG00002624 mRNA upstream 622219 23043824 ~ 23055716 (+) True AMCG00002624
AMCG00002635 mRNA downstream 286193 23967578 ~ 23985386 (+) True AMCG00002635
AMCG00002637 mRNA downstream 315862 23997247 ~ 24007711 (+) True AMCG00002637
AMCG00002636 mRNA downstream 338119 24019504 ~ 24036531 (+) True AMCG00002636
AMCG00002642 mRNA downstream 688499 24369884 ~ 24376014 (+) True AMCG00002642
AMCG00002646 mRNA downstream 824908 24506293 ~ 24517840 (+) True AMCG00002646
TU156281 other upstream 387400 23152648 ~ 23290535 (+) True G124689
TU156269 other upstream 497892 23068124 ~ 23180043 (+) True AMCG00002623
TU155679 other upstream 3401680 20274089 ~ 20276255 (+) True AMCG00002573
TU155541 other upstream 4545577 19130403 ~ 19132358 (+) False AMCG00002561
TU155458 other upstream 4839404 18832014 ~ 18838531 (+) True G123989
TU156498 other downstream 740867 24422252 ~ 24422613 (+) True G124863
TU156924 other downstream 2594206 26275591 ~ 26278973 (+) False AMCG00002684
TU156956 other downstream 2680827 26362212 ~ 26369525 (+) True G125219

Expression Profile