RNA id: TU156401


Basic Information

Item Value
RNA id TU156401
length 534
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G124779
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23873678 ~ 23928150 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaccacctgcctaatattgtgtaggtcccccttttgccgccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttggaaggtggggcctccatggattggacttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccatggtccagttctgatgctcacgtgcccattgtaggcacttttggcagtggacaggggtcagcatgggcaccctgactggtctgcggctatgcagccccatacgcaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcatgaactttttcagcaatttgagctacagtagctcgtctgttggatcggaccacacgggccagccttcgctccccacgtgcatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156386 lncRNA downstream 210106 23655984 ~ 23663572 (-) True G124765
TU156319 lncRNA downstream 577563 23138618 ~ 23296115 (-) False G124719
TU156251 lncRNA downstream 874570 22996819 ~ 22999108 (-) True G124669
TU156157 lncRNA downstream 1219959 22653482 ~ 22653719 (-) True G124591
TU156148 lncRNA downstream 1275123 22597999 ~ 22598555 (-) True G124582
TU156515 lncRNA upstream 482879 24411029 ~ 24411336 (-) True G124873
TU156550 lncRNA upstream 648015 24576165 ~ 24577131 (-) True G124907
TU156640 lncRNA upstream 1020000 24948150 ~ 24948841 (-) False G124975
TU156641 lncRNA upstream 1020000 24948150 ~ 24950358 (-) True G124975
TU156720 lncRNA upstream 1446730 25374880 ~ 25433728 (-) True G125036
AMCG00002634 mRNA downstream 85809 23777689 ~ 23787869 (-) True AMCG00002634
AMCG00002633 mRNA downstream 191084 23677942 ~ 23682594 (-) True AMCG00002633
AMCG00002632 mRNA downstream 402132 23421798 ~ 23471546 (-) True AMCG00002632
AMCG00002629 mRNA downstream 681022 23181931 ~ 23192656 (-) False AMCG00002629
AMCG00002625 mRNA downstream 836819 23033808 ~ 23036859 (-) True AMCG00002625
AMCG00002638 mRNA upstream 112191 24040341 ~ 24045879 (-) True AMCG00002638
AMCG00002639 mRNA upstream 123469 24051619 ~ 24065028 (-) True AMCG00002639
AMCG00002640 mRNA upstream 212410 24140560 ~ 24183507 (-) True AMCG00002640
AMCG00002641 mRNA upstream 267571 24195721 ~ 24211357 (-) True AMCG00002641
AMCG00002644 mRNA upstream 420730 24348880 ~ 24369782 (-) True AMCG00002644
TU156342 other downstream 688510 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 720514 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 5884213 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 7033956 16836156 ~ 16839722 (-) True G123585
TU154543 other downstream 8927367 14941260 ~ 14946311 (-) True G123263
TU156457 other upstream 333415 24261565 ~ 24261823 (-) True G124829
TU156479 other upstream 363637 24291787 ~ 24339566 (-) True G124848
TU156949 other upstream 2375732 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 2926743 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile