RNA id: TU156479


Basic Information

Item Value
RNA id TU156479
length 453
RNA type TUCP
GC content 0.50
exon number 4
gene id G124848
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24291787 ~ 24339566 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGAGAGGAGAGCGAgaaaccgagagagagagagagcgagaaaggAAGAAGGGCGCCCGAGAAGAAGAATCAAAGGAAAAGACACCTTTCCTCCAAGATGCAAATAACCTCTCTCTGAACGATGACAGCGATGGGTTAGAAAGGATTTAACatgattgcaaaataaaaagCAATTATATCTAAAGATGTCTGCTCCACTTGGGCCCCGGGGCGGCCCTGCCGCTCCTCCTGCGGCGGCTGTCCTACCAGAGATGCCGGACCTCAGCCACCTtacagaggaggagagaaagataatTCTCGCTGTCATGGACCGACAGAAGCAAGAAGAGGAAAAGGAACAGTCCATGCTAAAGGTCAAAGAAGAACAAAAGCCTCAGCCAGCGCAGTGGTTTCCCTTTAGTGGGATCACTGAGCTGGTAAATAACGTTCTTCAGCCCCAGCAAAAATCGCAA

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156401 lncRNA downstream 363637 23873678 ~ 23928150 (-) True G124779
TU156386 lncRNA downstream 628215 23655984 ~ 23663572 (-) True G124765
TU156319 lncRNA downstream 995672 23138618 ~ 23296115 (-) False G124719
TU156251 lncRNA downstream 1292679 22996819 ~ 22999108 (-) True G124669
TU156157 lncRNA downstream 1638068 22653482 ~ 22653719 (-) True G124591
TU156515 lncRNA upstream 71463 24411029 ~ 24411336 (-) True G124873
TU156550 lncRNA upstream 236599 24576165 ~ 24577131 (-) True G124907
TU156640 lncRNA upstream 608584 24948150 ~ 24948841 (-) False G124975
TU156641 lncRNA upstream 608584 24948150 ~ 24950358 (-) True G124975
TU156720 lncRNA upstream 1035314 25374880 ~ 25433728 (-) True G125036
AMCG00002641 mRNA downstream 80430 24195721 ~ 24211357 (-) True AMCG00002641
AMCG00002640 mRNA downstream 108280 24140560 ~ 24183507 (-) True AMCG00002640
AMCG00002639 mRNA downstream 226759 24051619 ~ 24065028 (-) True AMCG00002639
AMCG00002638 mRNA downstream 245908 24040341 ~ 24045879 (-) True AMCG00002638
AMCG00002634 mRNA downstream 503918 23777689 ~ 23787869 (-) True AMCG00002634
AMCG00002644 mRNA upstream 9314 24348880 ~ 24369782 (-) True AMCG00002644
AMCG00002643 mRNA upstream 38165 24377731 ~ 24386755 (-) True AMCG00002643
AMCG00002645 mRNA upstream 48568 24388134 ~ 24406980 (-) True AMCG00002645
AMCG00002647 mRNA upstream 347007 24686573 ~ 24687842 (-) True AMCG00002647
AMCG00002648 mRNA upstream 410643 24750209 ~ 24760885 (-) True AMCG00002648
TU156457 other downstream 29964 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 1106619 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 1138623 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 6302322 17922452 ~ 17989465 (-) True G123829
TU154950 other downstream 7452065 16836156 ~ 16839722 (-) True G123585
TU156949 other upstream 1964316 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 2515327 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile