RNA id: TU156550


Basic Information

Item Value
RNA id TU156550
length 472
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G124907
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24576165 ~ 24577131 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGAATAATCAATCCATTGCAAGGGAGAAGGGCAGCGAACTGGTAAGCCTGTCCGAGGCTGTACCTGCTAAGGGGGTCTCGACTGAACCAGTTCTGCAAAGAAGAAATGCTCTACTTTAGGAATGTGTGTTGCttttacacaaagaaaaatctattttattttatttctctagGAACCTTTGCCTGTAAACTCTCAGAACTACATCATGAACAACTTGAAAATTGTCATTGACATTTCTTCAGCATTATCTACTTTAAAAGTTGCCATTGGGTTCCTAGCTTTGAGAATTGGAGACCCAGAAGAGTTGCTTATTGACTACATCAAAAAGGATCTGAGAATGGAAGACAGAGCACAAACTCTGAATTCACCGGTCTTACAAACAAGCAAGGTGAAGCACATTAAATCACTCTGGCAGTTGCTTTCAACTAAACGATCTGTATTGCTTGTACAGATGAATCAGGTAATTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156515 lncRNA downstream 164829 24411029 ~ 24411336 (-) True G124873
TU156401 lncRNA downstream 648015 23873678 ~ 23928150 (-) True G124779
TU156386 lncRNA downstream 912593 23655984 ~ 23663572 (-) True G124765
TU156319 lncRNA downstream 1280050 23138618 ~ 23296115 (-) False G124719
TU156251 lncRNA downstream 1577057 22996819 ~ 22999108 (-) True G124669
TU156640 lncRNA upstream 371019 24948150 ~ 24948841 (-) False G124975
TU156641 lncRNA upstream 371019 24948150 ~ 24950358 (-) True G124975
TU156720 lncRNA upstream 797749 25374880 ~ 25433728 (-) True G125036
TU156719 lncRNA upstream 840820 25417951 ~ 25433728 (-) False G125036
TU156721 lncRNA upstream 854510 25431641 ~ 25433728 (-) False G125036
AMCG00002645 mRNA downstream 169185 24388134 ~ 24406980 (-) True AMCG00002645
AMCG00002643 mRNA downstream 189410 24377731 ~ 24386755 (-) True AMCG00002643
AMCG00002644 mRNA downstream 206383 24348880 ~ 24369782 (-) True AMCG00002644
AMCG00002641 mRNA downstream 364808 24195721 ~ 24211357 (-) True AMCG00002641
AMCG00002640 mRNA downstream 392658 24140560 ~ 24183507 (-) True AMCG00002640
AMCG00002647 mRNA upstream 109442 24686573 ~ 24687842 (-) True AMCG00002647
AMCG00002648 mRNA upstream 173078 24750209 ~ 24760885 (-) True AMCG00002648
AMCG00002651 mRNA upstream 199134 24776265 ~ 24786604 (-) True AMCG00002651
AMCG00002652 mRNA upstream 234225 24811356 ~ 24834198 (-) True AMCG00002652
AMCG00002654 mRNA upstream 307855 24884986 ~ 24916583 (-) True AMCG00002654
TU156479 other downstream 236599 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 314342 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 1390997 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 1423001 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 6586700 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 1726751 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 2277762 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile