RNA id: TU156717


Basic Information

Item Value
RNA id TU156717
length 2124
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G125035
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25451215 ~ 25453998 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGAATCCATTATAGTGTACAAATCTAATTGGGAGAAGAAAGTGATACTGACCGACTCTCTGTGTGGAGATCATGCGGGGCACCTGGGAAGAAGTTGGTCTCATTGTGCTGAAGGTTTGTGGCCTTGGAGCAGAAGGACGGATGGCACTGGGCATGTTCTGGAAATCTGCAttggggaaaaGTTGGGGTCTCACACCCTGAGTCGCCCAGCGAGGGCTGGGTCTCAGCTGTGCAAGCTGGCTGGTTGGATAGTACGCAGCCCGGTTCTGAGCCTGAGAaaggaggaaaataattaacatatgctctttccatttccatttaatcaattctaggatacaaaaaaaaaaaaaaaaaactggtaaACGCTTTGAGCTTTGCACAAACATAAGCTGGAGAAGTTTTTGCCTGGAGTCAATTTGCCATGGAagtctttaaatgatttagcaTTTAGGAGATTAATGCATATAAATTTGCATACGTTAGAAACACACAACAGTAACATATCCATTTAAAATCACCCTGAGAAGCTTCCGATATCAAATTGGACACCaatatgtacacaaaaaggACATTGCTTGGTTAAACAAACAGGTGTTTCAATACTATAATTTGAGTCCAGATGTGAAAAAAAGTCTTGCCTGTGGAATGGCTGCCATGAAGTAACCAGAAGGTGGTGCTGGCTGGTAAGGGTTGATGACTGGGTTGGGCACAGCTCTCACACTGGCCATCCTCTGCATGTACTGGTTGGTGAGATGGGCCTGGCGTTCCTCTTTGCGCTGAGCCAGAGCTACATAAAGTGGCTTGGTGGCAACGATCCTGCCATTCATTTCCGTCACAGCCTTAGTGGCTTCCTCCGGGGAGGAGAAGCACACAAAGCCAAACCCCTTGCTGCGACCTCCTTCCATCAtaacctaGCACTGGTAATGGTTCCAAATGGTGAGAATTCTTTGCGGAGTCTCTCGTCGTCAATACCGTCATCCAGATTTTTGACGTAGAGGTTAACaccctaaaaaaataaaattgttttatacCTATGGTCTCAGAGGCCTTTACACTTGCATGTTATCCCCTATACCCCCTTTCCATTTAATTAGAAGAAACTCAGAACTAGATTTCAACCAAATTGGATTTACATCAAACTCATACCTGGTAGCGAGTCATTCGGTCTTGTTTCATTTGCTCAAATTTGCGCTTCAGCTCCGTCTGCCGTTCCACTTTTTTCTGAGCACGCCCCACATAGATCTGCTTCCCATTGACTTCCTTCCCATTCATTTCATCCACAGCTGTGCATCTTCATGCCTCTCAAAACTGACGAAACCGAAGCCCTTGGATTTTCCACTGTCGTCGGTCATGACTCGGATACTCAAGGCCGGTCCTGTAATTGGATgtCATAATTACCAAATATTTCTTTGAGCTTTTCGTCATCCATGTCCTCTCCAAAGTTTTTGATGTAAACGTTGGTGAACTCCTTTGCCCTGGCTCCAAGCTCTGCCTCACGCTCCTTGCGAGATTTAAAACGCCCCAcaaatctgaaggaaaaaaagccAGGGTTACAATTCCATCCGGGTCTGTCAGGGCGGAATCACATGATCTAAAATTGTGAGGcggcatgaaaacaaaatgccctTTATACGAGATTTAATCAGAAAGAACTAATGTCGATAGAATTCTTTTATCCCCAGTATCTATGTGAAAAAGATATGGGGCCCATGAACTACCATGTCACTGTGGCAGCCATTTTGGCCAGTAGTGTCCACTAAGGAGGACATACTGAATTTGACAAGGCTGCAAGTGAATCTAGACTTAAGGAGATATGTTGGCATAATAAAAGGACCTTATCCTTGAAAGCAATGTGTTAAATTGTTACTTAAAGCTATACAAAAGGTTCCCTACCTAATTGATACAACTAGTTAGAATTATTGCTTTATGCCCCAAATTAAAACTACTTCACAATGTACAAAAACTATCTAGATGTAATGCACTGTAGATAATGGTCTATACTTACACTTTTCTGTCATTAAGCAACATGCCGTTCATTTTCTCAATGGCTCTTTCAgcagcctcctgggtctcaaaATGCACAAAGCCATACCCCTTTGAGCCATTTTCATCACAGACAAcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156720 lncRNA downstream 17487 25374880 ~ 25433728 (-) True G125036
TU156719 lncRNA downstream 17487 25417951 ~ 25433728 (-) False G125036
TU156721 lncRNA downstream 17487 25431641 ~ 25433728 (-) False G125036
TU156641 lncRNA downstream 500857 24948150 ~ 24950358 (-) True G124975
TU156640 lncRNA downstream 502374 24948150 ~ 24948841 (-) False G124975
TU156777 lncRNA upstream 156119 25610117 ~ 25612297 (-) True G125075
TU156879 lncRNA upstream 672556 26126554 ~ 26130462 (-) True G125160
TU156899 lncRNA upstream 750894 26204892 ~ 26205871 (-) True G125178
TU156922 lncRNA upstream 788256 26242254 ~ 26242531 (-) True G125200
TU156942 lncRNA upstream 821471 26275469 ~ 26279621 (-) True AMCG00002682
AMCG00002660 mRNA downstream 116553 25299701 ~ 25334662 (-) True AMCG00002660
AMCG00002653 mRNA downstream 484806 24963795 ~ 24966409 (-) True AMCG00002653
AMCG00002655 mRNA downstream 517464 24921106 ~ 24933751 (-) True AMCG00002655
AMCG00002654 mRNA downstream 534632 24884986 ~ 24916583 (-) True AMCG00002654
AMCG00002652 mRNA downstream 617017 24811356 ~ 24834198 (-) True AMCG00002652
AMCG00002665 mRNA upstream 119835 25573833 ~ 25603050 (-) True AMCG00002665
AMCG00002666 mRNA upstream 150169 25604167 ~ 25611494 (-) True AMCG00002666
AMCG00002671 mRNA upstream 193815 25647813 ~ 25676650 (-) True AMCG00002671
AMCG00002670 mRNA upstream 292085 25746083 ~ 25752614 (-) True AMCG00002670
AMCG00002674 mRNA upstream 334385 25788383 ~ 25822702 (-) True AMCG00002674
TU156479 other downstream 1111649 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 1189392 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 2266047 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 2298051 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 7461750 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 849884 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 1400895 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile