RNA id: TU156719


Basic Information

Item Value
RNA id TU156719
length 1784
lncRNA type inter_gene
GC content 0.43
exon number 6
gene id G125036
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25374880 ~ 25433728 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAGACAGCAAAGCAGGAGGAAAGCAGCCACTGCTGGTGTGGTGTAGTTTTCCAGatattaagcaaataaaaaaacaaccaaaactaaAGACTCCACTCCTCCAAAATTGTTttggtaattattttttattccacttACATGAAATTACATGTCTTCCCTCCAAATAACAGTTATGCTTGGGTGTTCTGTATGAAAATccagaaaacattaaacaaagctaGCCAGCCAGTCAGCAACAGCCTCCATTTACTTCCCCATTAAACTATTTCTTTAGCCACATGCATTTTAGGCGAGtatcaaaaggaaaacaaaggaaacaaaaacaaaaccctaataaaaaataaaaaaaagtaactaGATAAGCACATGGGAAATTCTTACTGCTCTGCTCGATATACAATAAAAGTTACAGTATCAAGCTTTTAATTGCTTGCTTTGTTCTTAGGTTTTCTATACCTCgtaatttttatttgttttacttttaaatttttacatagaaataaaaatgacttgCAAGTCacccaaaatgaaaatgaacttgAGCAGGTGACAGTGGAATGTTATCTTTTCTGCCCGTGCCAAAGGGAACGTGTTTGACAGCATCCTTTCGTGATGCCCTCCCAGCCAATTTCCTAGTTACAGACAGTCTTCATATGGACATGGGACACTATTTTGTGTTGGCTTTGTGGCACACCCCAGAATGTTTGAAAGAAATatggcaaacatttaaaaatgttacatacaTCTCAATCTGAAATCACACCCTTTGACTAAAGTCTTCAGTGTTCAGAACAATTGCCCCATTGCTCCTCACATGAAAACATGGCAAACAAACAAGTTCACCCTCACCctcccaaaaaagaaaagtgacagAAAGCTTGTGAAAGAACTAAAACAGAAACTAGTTGTATGGGACAGCTGGATGAGGTGGTCTCAGTGTTGATGAACTGGGATGATAGGCAGAGAGGAAAGGGGAGACTCAGTTATCTTTTCCATCCTCGTTGTCCTCTCCATCACCCTGGTTGTCTGAGGTCCACTGTCAAATTGTCTCTCAGTAGCTGCATGATTAATGTGCTGTCTTTGTATGAATCTTCATTCAGTGTATCAAGCTCTGCAATTGCATCATCAATACTGTTTTTGCCAGGTTGCAGGCTTTTTCAGGTGAGTTGAGGATCTCATAGTAAAAGACTGAGAAGTTGAGGGCCAGACCCAGGCGAATGGGATGTGTGGGCTGCATTTCTGTCCTGCTGTGGTCGAAAGCTTTCTGGTAGGCCTCCTGTGAGTTTTTAATGGTCGTCTTTGTCTGACCCAGCCACCTCAGCTAAGTAGCGATAGTAATCTCCTTTCATTTTCAAGTAGAAGACTTTGCTTTCTGCAGTAGAAGCTTTGGGAATCAAGTACTTGTCCAAAAGATTCAGAACATCCTGGCAGATTTCCTTGAGCTCTTTCTCGACCTTTTCCCTGTACTCTTTCGCCATCGCCTGCTTCTTGTCGCTGCCCTCAGTCTTCTGCTCAATGCTCGAGACCACCCTCCAGGAAGAGCGCCGGGCACCCACTACATTCTTGTAGGCCACGGAAAGCAGGTTACGCTCCTCACTGCTGAGCTCACCATCCTGCTCTGTCACCGCCTTCATGGAAGCGGCCATGTCATCGTACCGCTCAGCCTGCTCCGCTAGCTTGGCCTTCTGCACCAACTCGGCCTTCTGCGAGTCCTTTTCCTTGGGCACCGGCTGCTCAGACTTCTCCATGGCTGCTCAGTACTGTGGGGAGGGAGGAAGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156641 lncRNA downstream 467593 24948150 ~ 24950358 (-) True G124975
TU156640 lncRNA downstream 469110 24948150 ~ 24948841 (-) False G124975
TU156550 lncRNA downstream 840820 24576165 ~ 24577131 (-) True G124907
TU156515 lncRNA downstream 1006615 24411029 ~ 24411336 (-) True G124873
TU156401 lncRNA downstream 1489801 23873678 ~ 23928150 (-) True G124779
TU156717 lncRNA upstream 17487 25451215 ~ 25453998 (-) True G125035
TU156777 lncRNA upstream 176389 25610117 ~ 25612297 (-) True G125075
TU156879 lncRNA upstream 692826 26126554 ~ 26130462 (-) True G125160
TU156899 lncRNA upstream 771164 26204892 ~ 26205871 (-) True G125178
TU156922 lncRNA upstream 808526 26242254 ~ 26242531 (-) True G125200
AMCG00002660 mRNA downstream 83289 25299701 ~ 25334662 (-) True AMCG00002660
AMCG00002653 mRNA downstream 451542 24963795 ~ 24966409 (-) True AMCG00002653
AMCG00002655 mRNA downstream 484200 24921106 ~ 24933751 (-) True AMCG00002655
AMCG00002654 mRNA downstream 501368 24884986 ~ 24916583 (-) True AMCG00002654
AMCG00002652 mRNA downstream 583753 24811356 ~ 24834198 (-) True AMCG00002652
AMCG00002665 mRNA upstream 140105 25573833 ~ 25603050 (-) True AMCG00002665
AMCG00002666 mRNA upstream 170439 25604167 ~ 25611494 (-) True AMCG00002666
AMCG00002671 mRNA upstream 214085 25647813 ~ 25676650 (-) True AMCG00002671
AMCG00002670 mRNA upstream 312355 25746083 ~ 25752614 (-) True AMCG00002670
AMCG00002674 mRNA upstream 354655 25788383 ~ 25822702 (-) True AMCG00002674
TU156479 other downstream 1078385 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 1156128 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 2232783 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 2264787 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 7428486 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 870154 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 1421165 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile