RNA id: TU156879


Basic Information

Item Value
RNA id TU156879
length 3854
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G125160
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26126554 ~ 26130462 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAAAAGGGCAAAattctttaatgtgttttgtaggAAAATACATCTGAGAAAATAAGTTAGTGTCTCCGTTAAGAAGTTACACATccgtttaaaatgtttacagagtTTATACAGGGCAATTGTATGGTGAAACATGTCATCAACAATTTACTGACTCTCCAGTGGAAGCAAGCTGTACTACCTGAAACATGTCCTCTTCAGTGAAAATATGAAGCATTCAAAATAACACATCTTGCAGCCATTTGCAACTTTACCACCTTGAATGAGTTGTTGTATGTAACACCAGTCACTACTGAATTAACCACACACTACATTTGATCAAATTCTGAAATCCAATTCTTAATTtagcacacaaagcacaacCTAAAACTGAAGGTTaaagctgtgtatatatatatatataAACTTTCATATATTAGAACATAACTATGCTTTTTATATAAGAAATTGAGGGACATATTCAAAGAATTTCAAGTGTTCTATATTCATTTCTGCCAGATTCAAAGCTATATTGTACAATGCTACCGTTTCTAAATAGCATGCCCTTCAAAAAAATACACAcctacacagacagacatattgAGGCAGATAGGTGGACACACAGGTATataagatagatagatagtctACCTTTGAAAAAGTCAATATTAAGCCTAACATATGTTGACAGTGTATCAACCTATTTCTCCTGCCTCAGCCCTCTAAAGTACTTTATTGAATTTGTTGGTATCCTTGAGCTATTACTGTGCTTATCCATTTAGCCCGACACATTTGTTATCATAGTGATTGTTGATGGAGAGCCATGCACGTCTATCATTGATAAGAAATCAATTTTTAAGCATccaaaaaaataaggaaaccTGCTTTCTGTTGCAAAACTGGCTTATTATAAAAGAAATCACTAGGCAATTCTCAGAGCACTTTAAAGCCTCATTCGTAAAAGACAGGGCTGATATCTGCTATTATTTGGATAAAGCAGCAGCAATCAACACAAAAGCACAAGTTAGTGTCTAGTTTCTAATGGGAATGGATTTCAGTTTCCTTTCTAACTTAATAAACAGGTGCAAGTCAAATGTGTATGCCATGTTATTCTGCAAAATTGCGTAGACAAATAAACATCTACATTGCCAACCATTCAGACTAACAAAGCACCCCCAGCTCTTTCCCATCTTGTGTGCTAGTTTTAAAGTGAGCTTATTGACTAAACATTTGCTTTTGCAGGCctggaagaaaataatgatacaaaGAGAGTTTACCCTTACAATAACTAGTTATGGAAATGCCACAGTGAGGATAAATGTGGCCTTGTACAAGTTTTTGAAAGCTCACTTTGTAATACTCAGTGCAATTTGATCTTGACAAACTGCTGTTAATTGCCAAAACAGATTACAGTCTTTAATTACcagagtttttttatttatctcatGCAAGGATAGTAAAATGGATTGAACAAGGGCTTCTGCATGAAGATGTTGCCAATCTCGTTTATACTTATGTTGAAAACCGTCAGATTTTGTGGACTTGTTTAAAAACTGCATTAGTGCTCATTGCAAACACATCCAACAGAAAGAAGTAGAGAAATTAAAAGTAGGGAAAATAAGAATAGGTCAGTCACATTTGAAAACTATCCAAATAGCACCCTGCAACGTTACTGAAATTATGCCTGTTCTATATCCATTTATAGCTCTGTATCAATAATATTGGAACACTGCTACATTTCATTGCCTGTTGATTTTATGTAAAACTAAacgaggaaaaaaacaaaatctgtcagCATCTCATGTATTGCATcttgtggagaaaaaaacaaacgaaTCCACTACACTGCTTCTAGGGTTGGTTCATAAAAGGCATTGTTTGACTTTCATTTTGTGAACAATCCACATGTCTGTATGTTGTTCTAAGGTTTATTACATCCTTGCCCCACTGCAATTCACCCTCATCATGTTTTGCATGTTCTTAATACAGTATTAAGAAAGGTTGTTGGTGTAATAGGtaatatatgcattatattcTATTGCTACAGAAAAAGACAGCAGAAAATATTCACTAGTATAAGAGCTTAGTGCAATTGGCCCTTCAAACTCTTGAAAGGATCATTGGAGAGGGAACATATCATTAAAATGGTATAATTTAGAAACTTGAGGGCATTATTACAGGCATATATCTTATAAATAGCATGCACTGTTTTCCATATTTACAGcacaaaaatatagaaataaaaggaaattacaCCATCAGCTTTAACTGGAGACAAATGTTCAGAGAAAATCCTTAAGCGTgaaagaaacagacacagctTTTTGTCTACAAAGActcccattaaaaacaaatgaagggTAAAGAGGACATTTTTTAAACCCTGAGCTCAAGAAAGTGCATGACACCAGCATATATGGAAGGGTAAGAAATAATACAAGCCTTTTTATCAATACAGAAATATCCTCAGATTTTCACTGAAggattttttccttcttttaaagATTCCAGCCATGTTCATGGAAGCCTTTAGatacaataagaataatatttaaaacaaacatcccAATTCTGTGCCAAACACATTGATATCTCACCTGGATGCATTTATTCCAATAactactgaaaagaaaaacttagattaacagaaatatatatagttgaGTATTCTACAAACCAATACACATATCATTTATCTAGATCTTATTTTCTATGAGATACAAATGGTTAAATGGTTAAAACAAAAGTATgcttcaaaaggaaaaaaagagaggcTCTGAGACAGAAAGCAATGATTGGActtcacaaacaaaatgtgagaTTCACTTTTTGTAAGACTCATGGGGGGGAAATGGGGCTACATTAGTCTTTACAAAAGCAAACCTCTTACTATGATTATGAAGATGCAGAAAATAATCCAATtgcataaaaacaggaaaaatggaaaagcaaaaaatgcatAGCTGATTGTGAATGTATACATTGTCTTTCTACAGCTTactgaacaggaaaaaaagatgTCTGGACTCAGAAATGAGAGAAAACATACTCTTTTAGCAAAAAAAGatcacaagtttattttacACTAGGATCAAGACCTAGAAACAGAAATTTCAAAATGCACTTGATGCGGTCAAGGCCATGGTCAACATTTCAGTTGGTCCCCCAAAGGTGCTTATAAACCTCCTATgtacgttttattttattaaatgtaacattctGCACTAGTTTCTATATGCTTTCCTCCTATGCTCAGGAGTGCTCTATTGTCACCTAATGTGTTTATTCAGCCAACAAAGACTGGACTCAAAACCTTAAGGCACCCAAATTCACAATGCAACCGAGCCTGTGCGGCACACTTTCCCCAGTAATTCTTTGGTTTTCAACTCTCTGGAATCCCACACTTTCACACCGAAATGAAAACTGAGCACAAGATGTTGGAGACCTAATCATATTCAAAGATAGCAAAGACAATAACAGTAAGAGCAGTAGGAGGAAGAATGCCATAAATCACTTCTTACTTAATTTCAGTAAAAAGGAAGGAACTATTTTTCTTCATTAAGTGTGAATGAACAAAACTCCATGTGGGGGGgagggataaataaataaaacaaaaacttctgTTAGTGGCACTGTTGTATTGAACATTGTGTGCCCTAGGCCACTAGTCTGGCTCAGTTTTACAGTCTGTacagtggggtgggggggttcaaTGCCTTTCAGAAGTTCTGCTGTCTGCGCTTCTTGGCATCCATGGCGTCGAGGATGGGCTGCCTCTTGGCGGTGTAGCGCTGTCTCAGTTCCTCGATCTCTCGCTCCATCATGGGGTCCAACGCGCTGAGCCGCATCTGCAGCTCCTCAAAGCTCAGGTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156777 lncRNA downstream 514257 25610117 ~ 25612297 (-) True G125075
TU156717 lncRNA downstream 672556 25451215 ~ 25453998 (-) True G125035
TU156720 lncRNA downstream 692826 25374880 ~ 25433728 (-) True G125036
TU156719 lncRNA downstream 692826 25417951 ~ 25433728 (-) False G125036
TU156721 lncRNA downstream 692826 25431641 ~ 25433728 (-) False G125036
TU156899 lncRNA upstream 74430 26204892 ~ 26205871 (-) True G125178
TU156922 lncRNA upstream 111792 26242254 ~ 26242531 (-) True G125200
TU156942 lncRNA upstream 145007 26275469 ~ 26279621 (-) True AMCG00002682
TU157020 lncRNA upstream 365487 26495949 ~ 26498450 (-) True G125269
TU157043 lncRNA upstream 523748 26654210 ~ 26654689 (-) True AMCG00002694
AMCG00002673 mRNA downstream 121197 26002815 ~ 26005357 (-) True AMCG00002673
AMCG00002672 mRNA downstream 136991 25936202 ~ 25989563 (-) True AMCG00002672
AMCG00002674 mRNA downstream 303852 25788383 ~ 25822702 (-) True AMCG00002674
AMCG00002670 mRNA downstream 373940 25746083 ~ 25752614 (-) True AMCG00002670
AMCG00002671 mRNA downstream 449904 25647813 ~ 25676650 (-) True AMCG00002671
AMCG00002681 mRNA upstream 6495 26136957 ~ 26138496 (-) True AMCG00002681
AMCG00002680 mRNA upstream 77808 26208270 ~ 26234043 (-) True AMCG00002680
AMCG00002679 mRNA upstream 112225 26242687 ~ 26260306 (-) True AMCG00002679
AMCG00002682 mRNA upstream 136590 26267052 ~ 26275651 (-) False AMCG00002682
AMCG00002688 mRNA upstream 152878 26283340 ~ 26305661 (-) True AMCG00002688
TU156479 other downstream 1786988 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 1864731 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 2941386 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 2973390 23085994 ~ 23153164 (-) True G124719
TU155250 other downstream 8137089 17922452 ~ 17989465 (-) True G123829
TU156949 other upstream 173420 26303882 ~ 26305923 (-) False AMCG00002688
TU157116 other upstream 724431 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile