RNA id: TU157020


Basic Information

Item Value
RNA id TU157020
length 736
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G125269
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26495949 ~ 26498450 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcaaacacaagCGCGTGTACCCAGGTCGTTGCCAATGCTGTGGCGTGAGTGGATGGTAAAATGGAGGGTAAAATGATACCAGGAGGAGCTGACAATGCCAggttaagaaaaagaaaggcattGGAGGATGACACGGCCAAATGTGCCAAACTGACAGATATGTTTTCAAGACGACAAACGAGCACACAGGAACCGGCAACTCGAGagcccgctccttctcatccatggtccctaaatggtggaatgaccttcccaccgaagtcaaaacagcagagtccttgacctccttccggcgcttactcaagacacatcttttcagacaatacttgtaatattagtcctttactctcctgtaagatagcactttacaacattttatcatgcttcttgcgttactaatacttgtattattgatttcccctttgctccctttcccgtagcccttgactgtgacctaacatcttgactgcacttagcttttactttccaggatgcaaaacctcatttattgtatttacttgtgtaaattggaatgtgtacaatgtattatgctttgaattgctttgtattatgtaaatttaaatttgtaatatttgatgccttgtactgaactgtattcttgcactttgtattgcacttgtcgacctggataagggtgtctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156942 lncRNA downstream 216328 26275469 ~ 26279621 (-) True AMCG00002682
TU156922 lncRNA downstream 253418 26242254 ~ 26242531 (-) True G125200
TU156899 lncRNA downstream 290078 26204892 ~ 26205871 (-) True G125178
TU156879 lncRNA downstream 365487 26126554 ~ 26130462 (-) True G125160
TU156777 lncRNA downstream 883652 25610117 ~ 25612297 (-) True G125075
TU157043 lncRNA upstream 155760 26654210 ~ 26654689 (-) True AMCG00002694
TU157045 lncRNA upstream 157178 26655628 ~ 26655871 (-) True G125291
TU157051 lncRNA upstream 163254 26661704 ~ 26663029 (-) True G125297
TU157134 lncRNA upstream 415257 26913707 ~ 26915965 (-) True G125361
TU157152 lncRNA upstream 479234 26977684 ~ 26977920 (-) True G125376
AMCG00002686 mRNA downstream 43475 26395882 ~ 26452474 (-) True AMCG00002686
AMCG00002685 mRNA downstream 104967 26382511 ~ 26390982 (-) True AMCG00002685
AMCG00002690 mRNA downstream 120053 26363962 ~ 26375896 (-) True AMCG00002690
AMCG00002687 mRNA downstream 157792 26322898 ~ 26338157 (-) True AMCG00002687
AMCG00002689 mRNA downstream 176573 26318343 ~ 26319376 (-) True AMCG00002689
AMCG00002693 mRNA upstream 97681 26596131 ~ 26608752 (-) True AMCG00002693
AMCG00002694 mRNA upstream 115026 26613476 ~ 26664767 (-) False AMCG00002694
AMCG00002708 mRNA upstream 323515 26821965 ~ 26831030 (-) True AMCG00002708
AMCG00002705 mRNA upstream 358919 26857369 ~ 26875008 (-) False AMCG00002705
AMCG00002707 mRNA upstream 565311 27063761 ~ 27099867 (-) True AMCG00002707
TU156949 other downstream 190026 26303882 ~ 26305923 (-) False AMCG00002688
TU156479 other downstream 2156383 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 2234126 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 3310781 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 3342785 23085994 ~ 23153164 (-) True G124719
TU157116 other upstream 356443 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile