RNA id: TU157051


Basic Information

Item Value
RNA id TU157051
length 1326
lncRNA type intronic
GC content 0.33
exon number 1
gene id G125297
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26661704 ~ 26663029 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTCACTTtgaaaattcaatatttattgtattacagACTAAGAACAAATTATTTCAACAGAGGATTATTctcatgattaaaatgtatttatttatatcacaatGTATGAACATGTACAACATCAAGTtatatcagattatttttagttttatgtttgCTATACCTAAAGTGAATACTCCCAAGCACCCATTTCATTTGCAACCAAAAGTGACCGAtctcagcaaaataaataaataaggaaaccaTGTCTGTCCTTCGGCAACTCTGCTACACTCAGAACAAATAGTTGCTTTGTTAACAACACCTCACTATGAGTAATTTTGTCTGTAAACCTTGTTATAGTGCAACACAAAACCGAACACTTGAGGCCTGCAACATTTCAGGTGAAAtgtttgaggggaaaaaacaaactgggGGATGTAGACTTTTGAATTATAAATTGTATATGCTTATGAACAGAGacaaaatttacattaaaaggcattttattCCCATTTTTTGGTTACAGAAGTGCTGCATATTCATTTTAGTAAAGATAATTCAcgacaattaaaaataagattaaattcAAAGCGAGGTTTGGATAAATCTGTTCACTATGAATAGTGCTCAGTGAATGAAGCTCAAACGATCatagcttttttatatatatatttatttttctccatgaTATAGACAGTGCTTGCACATTTTATAACACCAAATATACAGACTTCATAAGACAGCACACACATATTGCTTTTCTGTAACACTACTTATTGTTAAAGTGGAACACTACCTCTAGGATgtaccaaatacaaataaatgaaaggatAAAAAGGTCTATCCCTCACATAAACAAGATCTAGGAGTAATGACCCACAGATGTAGCTACTGCACAGCACTACACAGATGAGGAATGcttttcacttgttttttaaatacctaACTGACCATAAATAGAGATGTTCTTTGagcacatatttatatactttgattgactgtttcattaaaaaaaaaaaaaaaaaaaaaagacacagtaGTCCACCCTGTCAAGATGAAATAATTTTACCTAATCACAGGGATCGGAGTCACAAGCGTGGATTTATccacaattaaattattttgaagtaAACTTAAGATATTTCGTTAATCTGCGTTCAACATTAAAACAGGGCATGAGGGAATGAGAGAGGTGGCTCATGTTTATTTGAAGTCGAGCAGGTTGCAGTCAATCTTGTAGTATACATACGGGTAATACTCCTGTTGGCTCAAATTCAGACCTGGTATGTCCATGGCTGCCTGTTATGGGACAATGAGAAGGAGAAATATAATGGACGTCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157045 lncRNA downstream 5833 26655628 ~ 26655871 (-) True G125291
TU157043 lncRNA downstream 7015 26654210 ~ 26654689 (-) True AMCG00002694
TU157020 lncRNA downstream 163254 26495949 ~ 26498450 (-) True G125269
TU156942 lncRNA downstream 382083 26275469 ~ 26279621 (-) True AMCG00002682
TU156922 lncRNA downstream 419173 26242254 ~ 26242531 (-) True G125200
TU157134 lncRNA upstream 250678 26913707 ~ 26915965 (-) True G125361
TU157152 lncRNA upstream 314655 26977684 ~ 26977920 (-) True G125376
TU157195 lncRNA upstream 468857 27131886 ~ 27197333 (-) True G125415
TU157256 lncRNA upstream 702433 27365462 ~ 27365663 (-) True G125473
TU157257 lncRNA upstream 705579 27368608 ~ 27368869 (-) True G125474
AMCG00002693 mRNA downstream 52952 26596131 ~ 26608752 (-) True AMCG00002693
AMCG00002686 mRNA downstream 209230 26395882 ~ 26452474 (-) True AMCG00002686
AMCG00002685 mRNA downstream 270722 26382511 ~ 26390982 (-) True AMCG00002685
AMCG00002690 mRNA downstream 285808 26363962 ~ 26375896 (-) True AMCG00002690
AMCG00002687 mRNA downstream 323547 26322898 ~ 26338157 (-) True AMCG00002687
AMCG00002708 mRNA upstream 158936 26821965 ~ 26831030 (-) True AMCG00002708
AMCG00002705 mRNA upstream 194340 26857369 ~ 26875008 (-) False AMCG00002705
AMCG00002707 mRNA upstream 400732 27063761 ~ 27099867 (-) True AMCG00002707
AMCG00002704 mRNA upstream 451176 27114205 ~ 27119264 (-) True AMCG00002704
AMCG00002709 mRNA upstream 478096 27141125 ~ 27141425 (-) True AMCG00002709
TU156949 other downstream 355781 26303882 ~ 26305923 (-) False AMCG00002688
TU156479 other downstream 2322138 24291787 ~ 24339566 (-) True G124848
TU156457 other downstream 2399881 24261565 ~ 24261823 (-) True G124829
TU156342 other downstream 3476536 23181921 ~ 23185168 (-) True AMCG00002629
TU156333 other downstream 3508540 23085994 ~ 23153164 (-) True G124719
TU157116 other upstream 191864 26854893 ~ 26875246 (-) True AMCG00002705

Expression Profile