RNA id: TU173921


Basic Information

Item Value
RNA id TU173921
length 1485
RNA type TUCP
GC content 0.57
exon number 3
gene id AMCG00002725
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 184121 ~ 189337 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCAGTGGGTGCTCAGTAAGCCTCTTGTCTTCCCACTGCAGGGGAATTAGCCTGTGATAGCGCAGATTAAGATCAGGGTCTTAGGCGCAAACAAACTGCTTTTCATTGTCTAATCGAGCAGCCCAGAGTCAACATCATGAGAGCTGTCTGCTGTGTCCTTCTCTGCTCCCTGCTCGCCCTGCAAGGCGAGGCTCTGCGCTGCTTCACCTGCGTCGGCTCCAACGACGAGGACTGCAACCGCCAGGGCTCCCAGCAGTGCCCCAGCTACTCGGACGCCTGTGCCATCATCAAGGGACAAGCCAATGGCGTGATGAAGTCCTGCTCGTACCGCTCCTTCTGTGAGCAGGCGCGGCGTGAGGGCTCCAAGGCGCCAGGGGTCCGAGTGCACTGCTGCTTCTCTGACAACTGCAACAGCAAGGGCCGCGCCGCCAGCCACACTTACAGCGCCAGCTACCTACTCGTCCTGGCGCCGCTGCTGCTGCGCCTGCTGTTCTTCTAGCCGTCAGGCGCCCCCCTACCCCCCCGCCCTCCTCCTACTCCGTCCACAGCCTCCCCTCCCCCGGCCTGGGCACAGTCGCCATGCTCTGTGTGGATCGGGGAGGAAACAGGTCACTGAACACGGAGCCAATCCGGCAGATCAGCAAAATCAACAGTGAAGTTCTGAGAACTGGTTACGATTCGACGATTGCATTGCAGCTGTGCCAGAGCCCTGTGAGACCCTGGcaagtctctctctttctctctctctcagctccttctctcgctctcttctTTTATCCCCCCCATCCTGATTCTCCCTCACACTCCATGGATCTCAAGACAGCCGCCAGCAGGCTCTGAACCCCCCGGTCCCTCCTTCAACATGACCTTCACCCACAGCTGCCTCCGCTGCGTCCTCTCCAGCCTGCTCTCAGCTCcggtgtcagtcagtcagactcTGTGTGCAGCAGTCAGTCAGGTCCTGGCACTGTCCCGCTATCGGCATCGCCACTCCTCCGCTGCCCTCAGCCCCGCCCATGCGTGCTTTGGGATGTTCTTCAGGATTAAAAGCCTTGTATCAATGCAAgcttgtataattatttttactttattgtctCCAATCACATGCCTGCACAATGTGTGCCGGTCACTCTGAGTGTGAGACCCCAGGGTCACTGCTGTCTGCTCCCAAAACAAACAGGCCACCTAGCTGAGCTTCCCAGAGCAGCCCAGAGCCCCACAGGGCCCCCTGCAGACCCCCAGAGCCCCCCGGAGCCGGTGTAAACAGGCCGACTCTCTCGGCGCGCTGCCGATTCAGGGCCCCTGCCAGAGCTGTCTGCTGCACACAGGCTGACGAGACACGTTTCACATCAACAGCTGGGATTTCACACATCCACTCACGTTACTCAGATTAAAGAggatgtttataaatatatggaactctttctttgtttgtctagttctatgtaaatataaataataaacttagtGCATTTTTTCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173928 lncRNA upstream 37762 227020 ~ 230780 (-) True G138282
TU173958 lncRNA upstream 112824 302082 ~ 305860 (-) False G138303
TU173959 lncRNA upstream 112824 302082 ~ 387075 (-) True G138303
TU173960 lncRNA upstream 112824 302082 ~ 385604 (-) False G138303
TU173957 lncRNA upstream 114140 303398 ~ 305860 (-) False G138303
AMCG00002724 mRNA downstream 1598 172793 ~ 182523 (-) True AMCG00002724
AMCG00002728 mRNA upstream 1082 190340 ~ 228169 (-) True AMCG00002728
AMCG00002727 mRNA upstream 65691 254949 ~ 261173 (-) True AMCG00002727
AMCG00002731 mRNA upstream 91556 280814 ~ 292475 (-) True AMCG00002731
AMCG00002734 mRNA upstream 294644 483902 ~ 484300 (-) True AMCG00002734
AMCG00002732 mRNA upstream 296578 485836 ~ 513387 (-) True AMCG00002732
TU173884 other downstream 37281 144926 ~ 146840 (-) True G138245
TU174098 other upstream 618897 808155 ~ 811005 (-) False AMCG00002743
TU174097 other upstream 623487 812745 ~ 821591 (-) False AMCG00002743
TU174135 other upstream 733752 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 733752 923010 ~ 924234 (-) False AMCG00002752
TU174137 other upstream 733752 923010 ~ 925398 (-) False AMCG00002752

Expression Profile