RNA id: AMCG00002727


Basic Information

Item Value
RNA id AMCG00002727
length 2483
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00002727
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 254949 ~ 261173 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCTCTCTACGAGCGAGTCCATCCCGCAGCTCCCCTCTCCGGCCGCCACGCCGCAGCGGAGCCGCAGCGCCCCCTGCAGAGCTCCTCATCGGGAGGCTCGGGAGGGACAGACACCCTGGCGGTGGAATTGGACGGAACATGAAccgatataataataataataacatccgATGCAATAACCGTATTTTAATATCAGTGTCAGAGAAGCTACGCAATGCAGTCCATGTTGTTTTatgtgtaattgtgtatttgACTAATCACACAGAAAGCAGTTGTACAGCGTTGTATGAAAACGTGTATTTACTTATAATAAGGACGTGCGGTTATTCCCTTCCGGTGCAGCAGGTCAAGCAGCGCAGTACTTCCGGGTCAGGGGTGACCTGCGGTCTTGAATGTATTGGTGCCGGGGAACgaaagtaaaaacagaaatcCGTTGAAAAAGTTGAGGAAGTGAAATTAGTGGCACCAGCGCATGTGCCAGGTCCCCGCCCGGCTGTGTCGTGCTGGCGGTGAGAGTCGTGGAGCGGCCGGGGTGTCAGGCCTGACATCTGCAGTTGTGTGaccaagaaaacacacaacctgCACGATTTTAACACACTGTGCACAGCAGCACCGCGGTTTTAAAAGCACGAAGTTTGATCCAGTGGACGGTTCGTTTGCGGAGTCTGtttaaacaacaacattcaaAGGGTTGTTATTCCCCGTGAGGCAGACGAGGCTGTGGGGCGGCCGGACGGGAGCGGAGGCACATGGCCGAGGCACGGAGGGGCAGTCGGCCACAGGAGGGCAGGATGCCGCAGCAGAATGGGGTCCGGGGGCGTCCGAGGGCGGAGCAGGGCGACGTGGCTGAGGACGAAGGATCGCAGCCGGGGGGGTCCGGCGTCCAGCAGGAGGATGATGACCCCGCCGCTCGCCGGCACATCCGGCACCAGTACAGGGAGCTCATCAACAACGTGCAGCAGAACCGGGAGGACATGCTGagccccaacaacaacaaactgacCGAGGCTCTAGAGGAGGCCAACAAGCTGTTTGTGAATGtgcgTCAGGCCCGTGAAGCCGCACTGGATGCACAGTTCCTGGTTCTGGCCACAGACCTGGGCAAGGAGAAGGCCAGCCAGCTGCACGCCGAGGGCACTGTGTTCGACCCTGTGGCCTTTGCTGAGCACCTGCTGTCCTTCATGGGCCTGAACCggctggaggagggggaggagagtgACGAGGAGGGGTCTGGGGGGGGCTACCTGCCCCGGGACGCCTGGCACCGGCTGGGCAGGGAGGCAGAGAAGTGCTTCAAAACCTCTCCATCCTTCCATTACATGTTGGGCTCCTTCCTCCCAGACCCCCCGGCCCCCCGGCAGCGCGTGGAGAGGCAGCGCAGGGCCCCCAGCAAGGAGGAGCGCCGCATCATGCCCACACAGcTGAAGAAAATGGAAGAATCGTACCAGGAAGCAACAGAAAAGGAAGTGGAGAGGATTCTGGCGATTCTGCAGAGTTACTACGATGAGGACCCATCTAGTCCTATATCCTACTTCGAGTTTGTGATCGATCCCAAATCCTTTTCCCGCACGGTGGAAAACATCTTCCACGTGTCCTTCCTGGTCAGGGACGGCCTGGCCAAGATCGAGCTGGACAATTACAAGTTGCCCGTGATCGCACCAGTGCTTGGGGAGCAGGAGGCGGGGGGCAGCGGCTCCGGCAGGAAGCAGTGCATCGTCGCCATCAGCCCCCAGACCTGGAAGGAGATCATCGAAGTCTTCCAGATCCAGGAGCCACTGATCCCTGCCCCGCCAATGGTGAAGGAGTGAGGGGCGGAGACGGGCAGCCCCCGGACACGGCCCGCTCCGGTTGTGTGAGTTTAAAGGGGCTGAGCCGAGACCCAGAGAAGACGCCCCCATTCTGCTCTGAGAACTCCAGCCCACCGGGGGCTGCTTCGGAGCATCTCCTGAGGGGAAGCGTGTTGGTGTGTCTGAATTACCCAGCGGGAGAAGGGGGGGTGTGACGGTGAGGGGCGTGAGGGCAGCAGACACTTCTGCAGGCCAGTGATTAGTCCCCCCCAGCTGGCTGGCGTCTGTGTGTGAAGAGTTTATCGCTCTTGTGCTTGTGTtgtgaatgagagagaaaaggtTTATGCCTGTGTAGCACAGACTTTACGtgagaaataaaagaaaagctaACCCCCTCCTCATGAGGGTCccaatacaacaaataaaacccAATCCCAACGCAGGCAAGATGGCGCCGGCCGCAGGGGAGACGACGCCGGCCGCAGGGGTCCGGGGGGACACTGGGGGCTCTGGAGAAACTGTGTGGACTCGGCCTTCATTGTTTTCAGGATTAAAGTGCCTTCAAGCGGCTTCTCAGCTcaatatttttatactttttagttttagtttttttatcagaatgttgtatataaatgtactgCTTTGGGTACATTGTGATTAAAAATACTATAGAATTCACCGTCGTTGTGTTCGTT

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
K22825 NSMCE4, NSE4; non-structural maintenance of chromosomes element 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173928 lncRNA downstream 24169 227020 ~ 230780 (-) True G138282
TU173958 lncRNA upstream 40909 302082 ~ 305860 (-) False G138303
TU173959 lncRNA upstream 40909 302082 ~ 387075 (-) True G138303
TU173960 lncRNA upstream 40909 302082 ~ 385604 (-) False G138303
TU173957 lncRNA upstream 42225 303398 ~ 305860 (-) False G138303
TU173961 lncRNA upstream 74564 335737 ~ 342518 (-) True G138304
AMCG00002728 mRNA downstream 26780 190340 ~ 228169 (-) True AMCG00002728
AMCG00002725 mRNA downstream 65612 184341 ~ 189337 (-) False AMCG00002725
AMCG00002724 mRNA downstream 72426 172793 ~ 182523 (-) True AMCG00002724
AMCG00002731 mRNA upstream 19641 280814 ~ 292475 (-) True AMCG00002731
AMCG00002734 mRNA upstream 222729 483902 ~ 484300 (-) True AMCG00002734
AMCG00002732 mRNA upstream 224663 485836 ~ 513387 (-) True AMCG00002732
AMCG00002733 mRNA upstream 303487 564660 ~ 579964 (-) True AMCG00002733
AMCG00002737 mRNA upstream 489462 750635 ~ 751030 (-) True AMCG00002737
TU173921 other downstream 65691 184121 ~ 189258 (-) True AMCG00002725
TU173884 other downstream 108109 144926 ~ 146840 (-) True G138245
TU174098 other upstream 546982 808155 ~ 811005 (-) False AMCG00002743
TU174097 other upstream 551572 812745 ~ 821591 (-) False AMCG00002743
TU174135 other upstream 661837 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 661837 923010 ~ 924234 (-) False AMCG00002752
TU174137 other upstream 661837 923010 ~ 925398 (-) False AMCG00002752

Expression Profile