RNA id: AMCG00002735


Basic Information

Item Value
RNA id AMCG00002735
length 3309
RNA type mRNA
GC content 0.64
exon number 23
gene id AMCG00002735
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 736334 ~ 760207 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCCGGGCTCTGAACTCTGACCTCCCCGAGCGGCCCTGCTGTGCTGCTGGGACTCAGACAAGAGAAACACAACGCTGCCTTCATGCCGCCGCTGCACTGAGAGGCTGCTGCGATGCGTGCGGCTCTGATGGCACCCAGCTGCCGTGGCCGGTACTGACTGGTCGGCACGTATCTGCTGCTCTGAACCAGCGCTGGAGCAGCGAGCGGCCCGGCATCGTTCCCCCGAGACAGGAATGCACTATTAGAGTACAGGGCAGTGTTGCAGGGCAGTTGCTGAGCCGCCGGTTTTCTCTGGACCAGGACACAGGCTGGGTGTCGCTCAGCGCGCGGCTAGACTTCGAGCTGACGCGGCGCTACACCCTGACGGTGATTGCACGGGATGGGGGCGGCGAGGAGACCACGGGACGCGTGCGCATCAATGTCCTGGACGTCAACGACAACACGCCCAGCTTCCAGAAGGAGGCGCGACCGATGAAGACTCCCCCCCAAATAACATCATCACGTACTCCATCACCTCGGCCTCTGCCTTCCCCAACTTCTTCTCCATCACCGTCGTGGAGGGTTACGGAGGACAACGGCACCCCCCCCCTCAACAGCACCGTGCCCGTCACCCTGGAGCTGTTCGATGAGAACGACAACCCCCCCACCTTCAGCCAGCCCTCCTACGTCATCACCGTCCCTGAGAACATCATGGCAGgggcaACGGTGCTGTACGTCAACGCCACAGACCTGGACGCATCTCGGGAGTTTGGCCAGGCCTCGCTCATCTACTCCCTGGAGGGCTCCACGCAGTTCCGCCTCAACGCCCGCTCAGgggaGATCACCACCACTGCTCTGTTGGACCGGGAGGCGAAGTCCGAGTACATCCTGATCGTCCGGGCCGTGGACGGGGGGGTGGGACCCACGCAGAAAATCGGCATCGCCACGGTGAACATCACCCTGCTGGACATCAACGATAACGCCCCGgTGCTGGCTGTGGACCCAGACAGCGGTTTGAACGGCAGTGTGCTCTACAGCATCAACCCCCCCAACCGCTTCTACACCATCAATGGCACCAGAGGGACCCCACCTCTGCGCTCCTCCGTCAGCACCACAGTCCTGGTCAACCTGCTGGACCTGAACGACAACGACCCGCAGTTCGTCAACCTGCCGGGGGTGGCTGAGGTGTCGGTGGTGGATCCTGACGAGGGTGGGAACGGCCAGGTCGGCCTGTCTCTCCAGATGGGGATGCCGCGGCTGGACTTTGTCATCAACGGCTCGACGGGCGCGGTGGTCTCCACAGCGGTGCTGGACCGCGAGCGCACGGCCCAGTACATCCTGCGCCTGAGCGTGGCACGCGACCAGACCGTCACCCGGCTCAACTGCAGCGACAACGACGCCGGGCTGAACGCCGAGCTCAGCTACTTCATCACAGGAGGGAACCAGGACGGCAAGTTCAGTGTGGGCTTCAGGGACGGCGTGGTGCGCACCGTGGTGGGCCTGGACAGAGAGACGCAAGCCTCCTACACCCTACTCATCGAGGCCATCGATAACGGCCCGGCGGGGGGGCGGCGCACTGGCACAGCCACGGTGAACATCGTGGTTCAGGATGTCAACGACAACCGGCCCATCTTCCTGCAGAACAGCTACGAGGCCAGTGTGCTGGAGACAGTGCCGCAGGGGACCAGCATAGTCCAGgtgcAGGCCACAGACGCTGACGAGGGCGAGAACGGCAGGGTGCTCAACGGCCTGTTCAACATCAGCCAGAGCACGGGGCTGGTGTCCCGGGGGCAGCGGCCCCTGGACCGAGAGGCCAGCAGCTCGCACGTGCTGGAGGTGGAGGCCTACAACAGCGACCTGGGCTTCATGAGGAGCTCGGTCCGGGTGATCGTGTACGTGGAGGACGCCAACGACGAGGCGCCGGTCTTCACCCAGCAGCAGTACAACCGCCTGGGCCTGCGTGAGACGGCAGGCATCGGCACCTCCGTCATCGTAGTCCGCGCCACTGACCGCGACATGGGCGACGGGGGGGCGGTGGCGTACAGCATCGTCTCCGGCTCGGATAGGAAGTTCGAGATCGACGTGAGCACGGGGCTGGTGACCACGGTGGACTACCTGGACTACGAGACGCAGACCAGCTTCCTGATGAACGTCTCGGCCACTGACCAGGCGCCGCCCTTCCACCGCGGCTTCTGCAGCGTGTACGTGACGCTGCTGAACGAGCTGGACGAGGCGGTGGCCTTCTCTCTGGCGGCCTACGAAGCGGCGCTGCGTGAGAACATCGCCACAGGCACCGAGGTGCTGCAGGTGCGGGCGCGCTCCGCCGACAACCTCAACCAGATCGCCTACCGCTTCGACCCGGACACCTCGCCGCTCGCCCTGGCGCTCTTCAAGATCGACAGTGTCACCGTGTCCATCACCGTCCTGGACGAGAATGACAACAGCCCCGAGTTCGACATCACGTCCGATTCGTCGGTGGACATTCCGGAGAGCACGGCCCCTGGGAGGAGGGTGGCCCTGGTCCTAGGGAGGGACAGGGACGCTGACAAGAACGGACTGGTGACCTTCTCGCTGGTGGCCGGGAACATCGGAGAGGCGTTCGAGATCCGCACCACCAACGCCACGTACGGGGAGCTGTTCGTAGTGAAGACACTGGACCGAGAGGCCATCGACCGCTATCTGCTCACGGTGCGGGCCGTGGACAGCGGCTCCCCCCCCCGCTTCACTGACTGGCCGCTCACCATCAATATCCTGGATGTGAACGACAACGTGCCGAACGTGGGCGGCGGCACGGCAGTGATGCGGGTCCAAGCCACGGACCGCGACGTGGGCTCCAACGGCATGCTGTTCTACTACATCACCAGCGGCAACGAGGACCTCACCTTCCGCATGGACCGGGTGACGGGCGAGGTGGTGACCCGGCCGTCCCCGCCTGACCGCGAGCGCCAGCACACCTACCGGCTCTCCGTCACCGTGGAGGACGACGGCACGCCCCCGCTGTCGGTGAGAGTCTGTCCCATTCCCACGCTATCGGCCTCTAGCGCGGCTTTCATCTGGAGGTTGAAATTGATCCTCACTGGTCCACAGGGGCTCAGAGGAAGACAGGGGGACACAGTCTGTCCCCGCGCTGGTCTGCGGTGTACTAGCGTCCCCGGAGACTCGGTGTGCAGTCAGTGGGGTCCCGTGTTCAGGGTGTACAGGGGGTTGTACAGATTCTCACTGAGGCTCTccttttatatttctgtttctattttaaTGTTCCTCTCTTCATGGTGTTGTTCCTGTGGCTCTGACTCTCAGGGcgtgtgcgtctctgtctcCTGGTGA

Function

GO: NA

KEGG:

id description
K06813 CDH23, USH1D; cadherin 23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174004 lncRNA upstream 87322 648593 ~ 649012 (+) True G138344
TU174003 lncRNA upstream 130407 605715 ~ 605927 (+) True G138343
TU173993 lncRNA upstream 225646 509869 ~ 510688 (+) True G138334
TU173992 lncRNA upstream 228933 506798 ~ 507401 (+) True G138333
TU173991 lncRNA upstream 229624 506358 ~ 506710 (+) True G138332
TU174017 lncRNA downstream 507 760714 ~ 762195 (+) True G138356
TU174040 lncRNA downstream 47849 808056 ~ 808613 (+) True G138375
TU174041 lncRNA downstream 48689 808896 ~ 810889 (+) True G138376
TU174044 lncRNA downstream 53086 813293 ~ 821565 (+) True G138378
TU174048 lncRNA downstream 59119 819326 ~ 841728 (+) False G138379
AMCG00002736 mRNA upstream 7847 718130 ~ 728487 (+) True AMCG00002736
AMCG00002739 mRNA upstream 29133 700320 ~ 707201 (+) True AMCG00002739
AMCG00002730 mRNA upstream 353904 350764 ~ 382430 (+) True AMCG00002730
AMCG00002729 mRNA upstream 434070 301750 ~ 302264 (+) True AMCG00002729
AMCG00002726 mRNA upstream 459543 263321 ~ 276791 (+) True AMCG00002726
AMCG00002741 mRNA downstream 16383 776590 ~ 800016 (+) True AMCG00002741
AMCG00002740 mRNA downstream 69222 829429 ~ 836163 (+) True AMCG00002740
AMCG00002747 mRNA downstream 130468 890675 ~ 893192 (+) True AMCG00002747
AMCG00002746 mRNA downstream 139616 899823 ~ 904354 (+) True AMCG00002746
AMCG00002748 mRNA downstream 165024 925231 ~ 930598 (+) False AMCG00002748
TU174062 other downstream 134621 894828 ~ 898423 (+) True G138387
TU174076 other downstream 150903 911110 ~ 913532 (+) True G138394
TU174081 other downstream 166262 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 166262 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 329071 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile