RNA id: AMCG00002739



Basic Information


Item Value
RNA id AMCG00002739
length 834
RNA type mRNA
GC content 0.64
exon number 6
gene id AMCG00002739
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 700320 ~ 707201 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAACACGGTGACAAAATCGGCGGAAACACACCGGCCCTGCGCATGCACTGCGGCGAACACGCCGGTGGCCACGCCCATCTTCATCGTGAACGCCACAGACCCGGACCAGGGCACGGGGGGCAGCGTGCTGTTCTCCCTGCAGCCGCCCTCCCCCTTCTTCGCCATTGACGGGGCGCGTGGTGTGGTCACGGTCATCCGCGCGCTCGACTACGAGACCACGCAGGCCTTCCAGCTCACCGTCCACGCCACGGGTAGCACGGTGCGCATGGTCTCAGCCATCGACCAGGACCGCGGGCGCCCCCGGGGCATCGGCTACACCGTCGTCTCAGCCCGTCGGGCCCGTGGTGTGGTCTGTGAGAGCGATCCGAGTGTGTTCTGTGCCCGGCCCGTCACTGTTGATTCCCGGCACGCTGTCGCTCTGAGAGTCCTGTGCTTCCCTGTACAAACCCTGAGAGCTCATAGCGGAGAGTCGGGGGCCATGGACCGCTCACAGGAGCAGCTACCGAAACTTCACACCAGTAAAAAGTGCGATAAACCGCCCTGTGAACCTGCTGCTCACATGTACACTACCAGCTCACCTGTCCGAGCTGCTAGTGACGgatgtgtttgcttttctttcctccGAGACCCTGCCTGGAGACTGCGTGCTCTTCAGCGAGGCGGTGAGTGCAGCCATGCCGCCACACAGCCCCGGCGGATGTCCCCCACCGGCGCACAGAGGTGCGAGTTTTCCAAGGGTATAAATGCCACCGCCGCACAGCGCCGCGGAAGTGAGCGGCTCCCGGCTCAGCAGCTGCAGACGCCTCGGGCTTCACGAGCTCTGGGTGGTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU174004 lncRNA upstream 51308 648593 ~ 649012 (+) True G138344
TU174003 lncRNA upstream 94393 605715 ~ 605927 (+) True G138343
TU173993 lncRNA upstream 189632 509869 ~ 510688 (+) True G138334
TU173992 lncRNA upstream 192919 506798 ~ 507401 (+) True G138333
TU173991 lncRNA upstream 193610 506358 ~ 506710 (+) True G138332
TU174017 lncRNA downstream 53513 760714 ~ 762195 (+) True G138356
TU174040 lncRNA downstream 100855 808056 ~ 808613 (+) True G138375
TU174041 lncRNA downstream 101695 808896 ~ 810889 (+) True G138376
TU174044 lncRNA downstream 106092 813293 ~ 821565 (+) True G138378
TU174048 lncRNA downstream 112125 819326 ~ 841728 (+) False G138379
AMCG00002730 mRNA upstream 317890 350764 ~ 382430 (+) True AMCG00002730
AMCG00002729 mRNA upstream 398056 301750 ~ 302264 (+) True AMCG00002729
AMCG00002726 mRNA upstream 423529 263321 ~ 276791 (+) True AMCG00002726
AMCG00002723 mRNA upstream 515639 165868 ~ 184681 (+) True AMCG00002723
AMCG00002720 mRNA upstream 553620 137527 ~ 146700 (+) True AMCG00002720
AMCG00002736 mRNA downstream 10929 718130 ~ 728487 (+) True AMCG00002736
AMCG00002735 mRNA downstream 29133 736334 ~ 760207 (+) True AMCG00002735
AMCG00002741 mRNA downstream 69389 776590 ~ 800016 (+) True AMCG00002741
AMCG00002740 mRNA downstream 122228 829429 ~ 836163 (+) True AMCG00002740
AMCG00002747 mRNA downstream 183474 890675 ~ 893192 (+) True AMCG00002747
TU174062 other downstream 187627 894828 ~ 898423 (+) True G138387
TU174076 other downstream 203909 911110 ~ 913532 (+) True G138394
TU174081 other downstream 219268 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 219268 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 382077 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile