RNA id: AMCG00002740


Basic Information

Item Value
RNA id AMCG00002740
length 2712
RNA type mRNA
GC content 0.62
exon number 13
gene id AMCG00002740
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 829429 ~ 836163 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGACCAGGCAGCGGTGCCCAGCGACCTTTATCAGCACGTCTACTCCTTCCTGCTGGAGAACAAGTTCACCAAGGCGGCGCAGGAGTTCATCAAGAAGACGAAAGTGAAACCTCAGGACCCCCAGGCAAGCAGTTTGCAGGACATCTTCACCTTCTGGCTGAAATCTCCCGAGTCCAAGAAGAGGAAGGCGGAGGCTAATGGCCCGGCTGCTAAGAAAGCCAAGCAGGCAGAGAGCTCCAGCAGCGACTCGTccagcgaggaggaggaggagaaacgGCCCGCTGTCAAGAGCCCTGCAGTGAGTAAGTCTCCGGCTGCCGCTGCGGTGAAGAAGGCCGCTGCGGTGAAGAAGGCgcagagcagcagcagtgaggaCTCCAGCGACTCGGAGGAAGAGCAGCCAAAGAAGACTCCAGTCAAGGTGAGCCAGGGCCGCGTGGCGGGAGGGCAGGCGGGGAAGCCCCCTGTGGCCCCGCAGAGGAAGAAGGACTCCAGCTCCAGCAGTGAATCTTCCGACtcggaggaggagaagaagaaggcGCCCGTCAAGCCTGCCACCCCAGCTGGTGAGTCTCGGCCGCCAGTCCCCCAAGAGCAGGGCCGCACACTGGCACCTCGCTTTGTGggattttcctgtttaatttaCTGTGCTGGATCGAGTGTCAAATGTCCGCTCCCCCTCGTCCCGAgtacCAAGCCTGCAGCCAAGGCCACCACCCCCAAGGCTAAGGCCCAGGAGAGCAGCTCCAGCGACAGCTCCAGCGACTCGGAGGACGAGCCGGCAGCCAAGAAGCCGGCCAAGTCTCCTGCAGCTGCTAAGCCTCCCGCAAAGACCCCCCCAGCGAAGGCCAAAGCAGCTGCCAAAGAGTCCAGCAGTGAGGAAGACTCTTcctctgaggaggaggagaagcgAGCCACCCCTGCCAAGAAACCCAAAGCAGGGTTCCCCAGTGAACAGACCGATTCTCAGCCCACTGTTGTAATGCTGACTGTTCTTGACCATATCTGTCATCGTTGCTGGCCAGGGCCCTACAGTGCTGTCCCACCCCCCTCCGCTGGGAAGAAGCCCTCCATCCCTGCAGGGGGTGTCAAGGCACAGAGCAGCTCCTCCGACAGCGAGGACAGCAGTGACGAGGACGCCAAGAAGAAGCCTGCGGCCAAACCCGCTGCAGCCGCGCCCAAACCCAAACCCGCAGCCAAGCCGGCAGCGGCTGCCAGCAAGAAGGCCGAGTCCAGCTCCGACAGCTCGGGTGAGTCCAGCTGCCTCTGTCCCTTTGCCACACGCTCCTGTCTGCTCTGTTGCCCAgttcctcactctctctctctctcagactcgAGTTCAGATGAGGAGGACGCTGCACCAAAGAAGCCGGTTAGCAAGGCGACGCCAGTGAAGCCTGCCACAGCAGTGAAGACCCCCCCGGCCAAGCCCGCCGCCAAGAAAACAGCCGAGTCGTCTGACAGCTCAGACTCAGACAGCTCTGAGGAGGAGGCCAAGACCAAACCAGCAGCAAAACCCACCACGCCCAAACCAGCGGCCAAACCTGTGACGCCCAAAGCCACGCCTGCCGCCAAGAAGGCCGCCAGCAGCTCGGACTCAGACAGCAGCTCCAGTGACTCGGAGGACGAGCCACCTAAGAAGCTGTCCGCCACGCCTGCCAAACCTGCCGCCGCCAAGCCGTCCACTCCCGCGGGGAAGGCAGCCGCCCAGAGCAGCTCGGacagctcctcctcctcggaCGAAGAGGAGGCGGCGAAGAGCAGCAAGCCGACGCCCGCCAAGAGCACCCCTGCCGCCGGCACCCcgaagagcaagagcaagagccAGACTGCCTCAGCGCCAGCCAGCAAGGCCAAGAAGCAGGAGTCTAGCAGCTCCTCGGACAGCTccagcgaggaggaggaggacaagcCGGTGAAGAAGCCTGCTGCCGCGGTGAAGAAGGCCACTCCAGCCAAGACGCCCCCGGCAAAGAAGAAGcaggagagcagcagcagctccgaCTCGTCGGATTCCGAGGATGAGGTTGCAGCAAAGGCGGCTGTAAAGCCCAGCCAGGCCAACGGCAAACCAGCCACGCCCAAGACCGTGGCCACGCCCAAGAAGcctgccgccgccgccgcctcctcctccagtGAGAGCAGCTCCGAGGACGAGGCTGAGGCTAAGGCCAAACCCGCCACCCCGGCCGCAGCAGCAAAATCTCCGGCCGTGAAGAAAGCCACGCCCGCCAAGAAGAAGGAGAGCAGTTCTGAGGACAGCTCTTCatcggaggaggaggagaagacgCCGTCCGCCAAGGCTGCCGTCACCCCCATCGCTAACGgcACTGGTGgcaagaggaagagagagaaagagtctTCATCggagagtgaggaggaggaggacgacgagAACAAAACCCCTGCAGCCAAGAAGCTGACGTCCTCGACGCCGCACTCCTTCCCCAAGGCCAAGCAGAAGATTACCAATACTCCTTTCCGTAGAATAAGAGACGAGGAGATTGAGGTCGACCCTCGACTCGCCAACAACTCCTTTGATGCAAAGATGGGGGCGGAGGGAGACTGGGGGGAGAAGGCCCACAGCGTGCTGAAGTTCACCAAGGGCAAGTCTTTCCGGCACGAGAAGACCAAGAAGAAACGCGGCAGCTACCGTGGGGGGGCCATCTCGACCTCCGTCAACTCCATCAAATTCGACAGCGACTGA

Function

GO:

id name namespace
GO:0048701 embryonic cranial skeleton morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174044 lncRNA upstream 7864 813293 ~ 821565 (+) True G138378
TU174041 lncRNA upstream 18540 808896 ~ 810889 (+) True G138376
TU174040 lncRNA upstream 20816 808056 ~ 808613 (+) True G138375
TU174017 lncRNA upstream 67234 760714 ~ 762195 (+) True G138356
TU174004 lncRNA upstream 180417 648593 ~ 649012 (+) True G138344
TU174047 lncRNA downstream 1046 837209 ~ 841728 (+) True G138379
TU174055 lncRNA downstream 7365 843528 ~ 849673 (+) True G138385
TU174074 lncRNA downstream 73224 909387 ~ 911080 (+) True G138393
TU174084 lncRNA downstream 101984 938147 ~ 938495 (+) True G138399
TU174181 lncRNA downstream 252276 1088439 ~ 1088816 (+) True G138475
AMCG00002741 mRNA upstream 29413 776590 ~ 800016 (+) True AMCG00002741
AMCG00002735 mRNA upstream 69222 736334 ~ 760207 (+) True AMCG00002735
AMCG00002736 mRNA upstream 100942 718130 ~ 728487 (+) True AMCG00002736
AMCG00002739 mRNA upstream 122228 700320 ~ 707201 (+) True AMCG00002739
AMCG00002730 mRNA upstream 446999 350764 ~ 382430 (+) True AMCG00002730
AMCG00002747 mRNA downstream 54512 890675 ~ 893192 (+) True AMCG00002747
AMCG00002746 mRNA downstream 63660 899823 ~ 904354 (+) True AMCG00002746
AMCG00002748 mRNA downstream 89068 925231 ~ 930598 (+) False AMCG00002748
AMCG00002753 mRNA downstream 155421 991584 ~ 1008956 (+) True AMCG00002753
AMCG00002757 mRNA downstream 253776 1089939 ~ 1093079 (+) False AMCG00002757
TU174062 other downstream 58665 894828 ~ 898423 (+) True G138387
TU174076 other downstream 74947 911110 ~ 913532 (+) True G138394
TU174081 other downstream 90306 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 90306 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 253115 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile