RNA id: AMCG00002741


Basic Information

Item Value
RNA id AMCG00002741
length 3123
RNA type mRNA
GC content 0.64
exon number 23
gene id AMCG00002741
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 776590 ~ 800016 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTTTATTGACAGgataaaaaggcattttataCCTtttaacacaacacacaacagcacgGGGACAGTGGTGGCGCTCAGGGAGCTGGACTACGAGATCAGTCATGGGCGCTACACGCTTGTTGTCACGGCTACAGACCAGTGTCCGATCACGGAGCTGCGGCTGACGTCCAGCACCACGGGCCCCTTCGACATCACCGAGGGCCAGCCGGGGCCGCGGGTCTGGACCCTGAAGGCCACGGACGAGGACTCGGGGCTCAACGGACAGGTGGAGTACAGCATCACGGCCGGAGACCCGCAGAATGAGTTCGTGGTGTCTCCGGTGGAGGGAGAGCTGAGAGTGCGCAGAGACGCAGAGCTGGACCGAGTTTTTGTTAGTCTTTACAGTCTGGTTGACTGTGATGGGGGCAGCAGCGTGGCCGAGGGCGCGGGGGTGCAGGCGCTGGTGGCGCGGGTGCAGGCCTTCGACGCCGACCTGGGCCGCAACGCCCTGCTGACCTTCAACATCACGGCCGGCAACACGGATGGAGCCTTCTACATCAACGACACGGACTCAGACGTGCTGGTGGTGACCATCCTGGATGAGAATGATAACCGGCCCATATTCACTCAGCAAAGCTACCAGGGAGAGGTGCCGGAGAACTCGCCCCCAGgcagtgCGGTGCTGATTCTGAACGGGCCGGTCCTGGCACTGGATCGGGATGACGGGGTGAATGCTGTGGTGTCGTACCGGCTGCTTGGCCCCCGGCTGGACTTGTTCACTGTAAACTCCAGCACAGgcaAGGTGGTGACGCAGCTGTCGGCAAGCGACGCCGACTCGGGTGCGAACGGGCTGCTGTGGTACCGCATCGAGAGCGGGGCGCAGGACCGCTTCGTGGTGAATGCCTCGACGGGTGCGGTGCTGGTGGGCAACGCCTCCCTGGACCGGGAGGAGCGCGGGTCGTACCggctggtggtggtggcgaCGGACCGTGGCACCCCCCCGCTCTCGGGCACGGCCACGCTGTCGGTGCTGCTGGACGACGTGAACGACTCGCGCCCGCGCTTCCTGCTCCCGGTGCAGACGGTCAGCGTCAACGAGTCGACACCGCTGGGCGCCGTGGTGGCCACGGTCACCGCCGAGGACCCCGACCTCCGACCTCGGCTGGAATATTACATCATCGCCCTGGAGGCGCAGGACGACAACAACGCCCCTGTGCCGGGCATGCAGGACGCCTTCGGCATCGACTTCCACACCGGCGCAGTGTTCGTGCGCAGCCCACTGAACCGCGAGCTGGTGGCCAGTTTCCAGATCTTCATCTCTGTGCACGACAACGCCAGCGACATCATCGACCAGTCCGTCAGCGTCCCTAACGGTGAGCCAACCCTCACCCCACCCTCCTTCGAGAGGTTCAACCTGACGGCCGTGGCCACGGACCGGGGGCGGCCCCCTCTCTGTGGCATGGCCACGCTGTGCATCACCGTCATCGACGTGAACGACAACCGGCCCACGTTCGTGCGGCCGGCCAACGGCACCATCATGCACATCCAGGAGGTGTTTGCGACGGACGGTGACGAGGGGGTGAACGGCGAGGTGCGCTACGGCTTCCTGCAGACGGGCGCCGGGAACCGCGACTGGGAGAACTTCCACATCGACCCAGAGACCGGCtcccGCTCTCACGGAGTGTTTTCTCCCCAGCTGATCGTGGTGGCCTTTGACCTGGGCCAGCCGGTGCCGTACGAGACCACGCAGCCCCTGCAGGTGGCGCTGTCTGACATCGACGACAATGAGCCCGTGTTCCTCAAGCCCCCGCGGGGCAGCGTGCCATACCAGTCTCTGTGGGTGCCGGAGCACTCCAGCCCTGGGACACTGGTGGGCAACGTGACTGGCGCTGTGGACGCTGACGAGGGCTCCAACGCCGTGGTGTACTACTTCATCGCAGGGGGCGACAATGAGGGCAATTTCCAGATGAGCCAGGAGGGGGTCCTGCGCGTGACGCGGGAGCTGGACCGGGAGGTGATGCCCGTGTACCCCATCATCGTCAAGGCCTCCAGCAACGGCAACTGGACGCCCCCacggggtcagaggtcagccCGCCCCCGCGCCCTGGACCCCAGCCTGGACCCCACTCTGCAGGAGTCCAACGACTCTGAGGACGTGGGCAACGTCTTCACCATCGGAGAGATAGACGGGGTGGTGCGGACATTTGATCTGTTCACGGCCTACAAGCCGGGCTACTTCGTGGTGGACGTGCTGGCCAGTGACCTGGCAGGCCACAGCGACACGGCCACCATCGGCATCTACATCCTGCGGGACGACCAGCGAGTGAAGATCGTGGTGAACGAGATCCCGGAGCGAGTGCGCCAGTTCCAGGATGAGTTCATCAGCCTGCTGTCCAACATCACTGGCGCCATCGTCAACACGGACGACGTGCAGTTCCACGTGGATAAGAAAGATCGTGTGAACTTCGCCCAGACTGACGTCCTGATCCACGTGGTCAACAAGCAGACCAATCGCATCCTGGACGTGGAGAGGGTGATCCAGATGATCGACGAGAACAAGGAGCAGCTGCGCAACCTGTTCCGGAACTACAACGTGCTGGACGTGCAGCCGGCCGTGAGCGGCAGAGCGCCGGACGACTTCACCACCCTGCAGatggcCATCATCATCCTGGCAGTGCTGCTCTTCCTCGCCGCCATGCTCTTTATCTTCATGAACTGGTACTACAGGACTGTACACAAAAGGAAGCTGAAGGCCATAGTAGCAGGATCCACAGACCAGGCCTGCCCCCTGCTGGCCACATCGGgctctctgATCCAGAGTGACGtagacgaggaggaggaggagcgcgGCTCGGGCGGCGGGCGCGGCACGCTGCGCTTCAAGCACAAGCACCCGGTGGAGCTGCGCGGGCCGGAGGGCATCCACGCGGTGCACGGCAGCACCGGCACCCTGCTGACCTCCGACCTTAACAGCCTGCCGGAGGACGACCAGCGCGCCCTCGGACGCTCCCTGGAGGCGCTGCACGCCGAGGGCCCCTACGCCGACCGCAACGCCCGCACCGAGTCGGCCAAGTCCACCCCGCTGCACAAGACCCGGCAGACCATCTCGGAGTCCCCGCTGGAGATCACGGAGCTATGA

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0060122 inner ear receptor cell stereocilium organization biological_process
GO:0050957 equilibrioception biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0007605 sensory perception of sound biological_process
GO:0035678 neuromast hair cell morphogenesis biological_process
GO:0042891 obsolete antibiotic transport biological_process
GO:0005929 cilium cellular_component
GO:0016020 membrane cellular_component
GO:0042895 obsolete antibiotic transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174017 lncRNA upstream 14395 760714 ~ 762195 (+) True G138356
TU174004 lncRNA upstream 127578 648593 ~ 649012 (+) True G138344
TU174003 lncRNA upstream 170663 605715 ~ 605927 (+) True G138343
TU173993 lncRNA upstream 265902 509869 ~ 510688 (+) True G138334
TU173992 lncRNA upstream 269189 506798 ~ 507401 (+) True G138333
TU174040 lncRNA downstream 8040 808056 ~ 808613 (+) True G138375
TU174041 lncRNA downstream 8880 808896 ~ 810889 (+) True G138376
TU174044 lncRNA downstream 13277 813293 ~ 821565 (+) True G138378
TU174048 lncRNA downstream 19310 819326 ~ 841728 (+) False G138379
TU174047 lncRNA downstream 37193 837209 ~ 841728 (+) True G138379
AMCG00002735 mRNA upstream 16383 736334 ~ 760207 (+) True AMCG00002735
AMCG00002736 mRNA upstream 48103 718130 ~ 728487 (+) True AMCG00002736
AMCG00002739 mRNA upstream 69389 700320 ~ 707201 (+) True AMCG00002739
AMCG00002730 mRNA upstream 394160 350764 ~ 382430 (+) True AMCG00002730
AMCG00002729 mRNA upstream 474326 301750 ~ 302264 (+) True AMCG00002729
AMCG00002740 mRNA downstream 29413 829429 ~ 836163 (+) True AMCG00002740
AMCG00002747 mRNA downstream 90659 890675 ~ 893192 (+) True AMCG00002747
AMCG00002746 mRNA downstream 99807 899823 ~ 904354 (+) True AMCG00002746
AMCG00002748 mRNA downstream 125215 925231 ~ 930598 (+) False AMCG00002748
AMCG00002753 mRNA downstream 191568 991584 ~ 1008956 (+) True AMCG00002753
TU174062 other downstream 94812 894828 ~ 898423 (+) True G138387
TU174076 other downstream 111094 911110 ~ 913532 (+) True G138394
TU174081 other downstream 126453 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 126453 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 289262 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile