RNA id: AMCG00002742


Basic Information

Item Value
RNA id AMCG00002742
length 363
RNA type mRNA
GC content 0.71
exon number 1
gene id AMCG00002742
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 828807 ~ 829169 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTCGCTACGAGCTGGCCCTGATCTTGAAGGCCATGCAGAGGCCGGAGACGGCGGCGGTGCTGCGGCGCACGGTGGAGACCCTGCTGGAGAGGGGCGCCGTGGTGCGGGCGCTGGAGAGCCTGGGCGAGCGGGAGCTGCCGTACAAGATCTCCAAGCACAACCTGCGCCACTGCCGGGCCGGGTACTTCCTGCTGGACTTCCACGCCGCCCCGGGCCTCGTCGCGCCGCTGCTGGACCACCTGAAGCGGGACGTGGACGTGGTGCGACCCACCGTGCTGAAGAAGCAGCCGCCGCCGCCCCAGAGCGCCCCCTGCCCCGGACTGGAGACGGCCACCGGCAAGCGAGCCCATAAGAGATGA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02990 RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174099 lncRNA downstream 21749 805760 ~ 807058 (-) False AMCG00002743
TU174037 lncRNA downstream 23652 803573 ~ 805155 (-) True G138373
TU174034 lncRNA downstream 27040 801214 ~ 801767 (-) True G138371
TU174012 lncRNA downstream 80338 747494 ~ 748469 (-) True G138352
TU173983 lncRNA downstream 345204 483224 ~ 483603 (-) True G138324
TU174126 lncRNA upstream 65843 895012 ~ 898417 (-) False G138430
TU174128 lncRNA upstream 65843 895012 ~ 898417 (-) True G138430
TU174129 lncRNA upstream 65843 895012 ~ 898417 (-) False G138430
TU174258 lncRNA upstream 660393 1489562 ~ 1518053 (-) True G138535
TU174285 lncRNA upstream 1104191 1933360 ~ 1933995 (-) True G138559
AMCG00002743 mRNA downstream 12046 806818 ~ 816761 (-) True AMCG00002743
AMCG00002738 mRNA downstream 59984 763129 ~ 768823 (-) True AMCG00002738
AMCG00002737 mRNA downstream 77777 750635 ~ 751030 (-) True AMCG00002737
AMCG00002733 mRNA downstream 248843 564660 ~ 579964 (-) True AMCG00002733
AMCG00002732 mRNA downstream 315420 485836 ~ 513387 (-) True AMCG00002732
AMCG00002745 mRNA upstream 12089 841258 ~ 843720 (-) True AMCG00002745
AMCG00002744 mRNA upstream 17394 846563 ~ 853730 (-) True AMCG00002744
AMCG00002750 mRNA upstream 75286 904455 ~ 907446 (-) True AMCG00002750
AMCG00002751 mRNA upstream 81556 910725 ~ 919475 (-) True AMCG00002751
AMCG00002752 mRNA upstream 91619 920788 ~ 923672 (-) False AMCG00002752
TU174097 other downstream 7216 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 17802 808155 ~ 811005 (-) False AMCG00002743
TU173921 other downstream 639549 184121 ~ 189258 (-) True AMCG00002725
TU173884 other downstream 681967 144926 ~ 146840 (-) True G138245
TU174135 other upstream 93841 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 93841 923010 ~ 924234 (-) False AMCG00002752
TU174137 other upstream 93841 923010 ~ 925398 (-) False AMCG00002752
TU174506 other upstream 1889039 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 3108595 3937764 ~ 3950168 (-) False AMCG00002828

Expression Profile