RNA id: TU174097


Basic Information

Item Value
RNA id TU174097
length 532
RNA type TUCP
GC content 0.61
exon number 4
gene id AMCG00002743
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 805760 ~ 821591 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGGCCACTGCATTGCAGCAGCggagcaggagcagcagcagcgacCCAAGCGAGAGCAGCGACCCAGCGATTCAACACAACCAGCACCGACACCAAACCCACCACCACCCAGCGGCCGTGATGTGGCTCACCCTCCTCTTCATCTCCACAGCTGCAGCCACCCCTCTCCTGGGGCAGGAGCAGTGTGTGAAGGGCCCCCCGTACTGGTGCCAGAATGTGAAGACGGCCTCCGCCTGTGGAGCAGTGTCCCACTGCCAGCAGAACGTGTGGAACAAACCCACCGCGAAATCCGTGCCCTGTGATCTGTGCAAGGAGGTCCTGACCGTGGTGGGCAACCTGCTGAAGGACAATGCAACTCAGGCCGAGATCCTGGACTACCTGGAGAAAGCCTGTCAGCTGATCCCGGACTCCGGCCTGTCCTCAGAGTGCAAGGAAATGGTGGACAACTACTACCCCATCCTCATCGGCATCATCACGGGGGAGCTGGTGAGTGGGGCGTGTGTGTGGTGCAGTCTCTGTTCTCAGGGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174099 lncRNA downstream 5687 805760 ~ 807058 (-) False AMCG00002743
TU174037 lncRNA downstream 7590 803573 ~ 805155 (-) True G138373
TU174034 lncRNA downstream 10978 801214 ~ 801767 (-) True G138371
TU174012 lncRNA downstream 64276 747494 ~ 748469 (-) True G138352
TU173983 lncRNA downstream 329142 483224 ~ 483603 (-) True G138324
TU174126 lncRNA upstream 73421 895012 ~ 898417 (-) False G138430
TU174128 lncRNA upstream 73421 895012 ~ 898417 (-) True G138430
TU174129 lncRNA upstream 73421 895012 ~ 898417 (-) False G138430
TU174258 lncRNA upstream 667971 1489562 ~ 1518053 (-) True G138535
TU174285 lncRNA upstream 1111769 1933360 ~ 1933995 (-) True G138559
AMCG00002738 mRNA downstream 43922 763129 ~ 768823 (-) True AMCG00002738
AMCG00002737 mRNA downstream 61715 750635 ~ 751030 (-) True AMCG00002737
AMCG00002733 mRNA downstream 232781 564660 ~ 579964 (-) True AMCG00002733
AMCG00002732 mRNA downstream 299358 485836 ~ 513387 (-) True AMCG00002732
AMCG00002734 mRNA downstream 328445 483902 ~ 484300 (-) True AMCG00002734
AMCG00002742 mRNA upstream 7216 828807 ~ 829169 (-) True AMCG00002742
AMCG00002745 mRNA upstream 19667 841258 ~ 843720 (-) True AMCG00002745
AMCG00002744 mRNA upstream 24972 846563 ~ 853730 (-) True AMCG00002744
AMCG00002750 mRNA upstream 82864 904455 ~ 907446 (-) True AMCG00002750
AMCG00002751 mRNA upstream 89134 910725 ~ 919475 (-) True AMCG00002751
TU174098 other downstream 1740 808155 ~ 811005 (-) False AMCG00002743
TU173921 other downstream 623487 184121 ~ 189258 (-) True AMCG00002725
TU173884 other downstream 665905 144926 ~ 146840 (-) True G138245
TU174135 other upstream 101419 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 101419 923010 ~ 924234 (-) False AMCG00002752
TU174137 other upstream 101419 923010 ~ 925398 (-) False AMCG00002752
TU174506 other upstream 1896617 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 3116173 3937764 ~ 3950168 (-) False AMCG00002828

Expression Profile