RNA id: TU174099


Basic Information

Item Value
RNA id TU174099
length 1206
lncRNA type sense_over
GC content 0.57
exon number 2
gene id AMCG00002743
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 805760 ~ 821591 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNGAAAGTGGGCGCCTGCCCCGGGGCCCTGAAGCGGCTGCTGGGAGGAGAGCAGTGCAGCTGGGGCCCGGCCTACTGGTGCAAGAACATGGACACCGCGGCCCGCTGCAGTGCCGTGGAGCACTGCAGACGCCACGTGTGGAACTAAGCGTCGGCGGGGGGAGGAGGCGGGAGAGAACAGCACAATCAACCTGGGGAgaaaaatttaagaaaataacgTAGAGCtgctttgtaatttttaaatttggtctattttttatttaattttctgaagATCTGAAATGACAGCATTGGGAGAAACGTCTTTCCCTCTCTGATGAGCGGGTgtcttttgggggggggagcGGCCGGGGCTGCGCTGGTGAACGCACTGGATCTGTAGGCTGAGCAAGGGGGGTCGGCGGCTTTTTctcttttagtttgttttaatctgacTGGAGATGGTGAGGGTTTGCAGAGACTGTCCCAGTTGTCAGAGGCACTGTAGTGGGGGGGGCAATgctgaatttatttaatcttttctcACTGGATTATAATGTCGCTGGGTCCAGTGTGATGCATGATCCCGTGAGAGGGGGAGGGCGCCGGTGCTGTGCTGCTCTGCCGGTCTGTGGAGACCCCTGCCGCTCCCGGCCGGCTGAGACCCCCCCCATCACTGAGTGGAGGGGCGGTGGGACCCAGAAGGCTGTGCAGCACCGGACCCCCCCCATCGCTGGGTAACAGTCACTGCTCTGGGTAAAGATGCACCTGGTCTTCAGTCTAAACGGTTGGGCATTCCCGCCAGACCCCCGCACCCCCGCACTGCTGCCAGGGCTCGGTCCCGGCAGGCCGCCTGGGGGCGGCAGCTTGAAGCCTAGTGATCCGAAAATGAGcttaatatgcattttgtaGAATCGGCGCaagttttataattaaaatgtgttgtcttAGCtgtgactgtttgttttttgagctGCACTGAATCAGTTTGTCCTTGGCATGGGGGGGTGGCATGGCCACAGCGCCCCCGCCGCCCCGTCGCTGTTCATCATTAATACACGCCAACGCTGCCGCAGCAGGCGCCCTGTCAGCCGTTCTACTGTGCCAGGCTGTGGCAACGCCATCCACCTGGATTTAACAAAATACCAATAAAGAGTCTAAACCCGCCTCTGTGTCTTTCTCCTTCCATCTTGTGCCCTCGGTCCGAGCTGTGCTGGGTGGGGGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174037 lncRNA downstream 605 803573 ~ 805155 (-) True G138373
TU174034 lncRNA downstream 3993 801214 ~ 801767 (-) True G138371
TU174012 lncRNA downstream 57291 747494 ~ 748469 (-) True G138352
TU173983 lncRNA downstream 322157 483224 ~ 483603 (-) True G138324
TU173969 lncRNA downstream 434136 366207 ~ 371624 (-) True G138310
TU174126 lncRNA upstream 87954 895012 ~ 898417 (-) False G138430
TU174128 lncRNA upstream 87954 895012 ~ 898417 (-) True G138430
TU174129 lncRNA upstream 87954 895012 ~ 898417 (-) False G138430
TU174258 lncRNA upstream 682504 1489562 ~ 1518053 (-) True G138535
TU174285 lncRNA upstream 1126302 1933360 ~ 1933995 (-) True G138559
AMCG00002738 mRNA downstream 36937 763129 ~ 768823 (-) True AMCG00002738
AMCG00002737 mRNA downstream 54730 750635 ~ 751030 (-) True AMCG00002737
AMCG00002733 mRNA downstream 225796 564660 ~ 579964 (-) True AMCG00002733
AMCG00002732 mRNA downstream 292373 485836 ~ 513387 (-) True AMCG00002732
AMCG00002734 mRNA downstream 321460 483902 ~ 484300 (-) True AMCG00002734
AMCG00002742 mRNA upstream 21749 828807 ~ 829169 (-) True AMCG00002742
AMCG00002745 mRNA upstream 34200 841258 ~ 843720 (-) True AMCG00002745
AMCG00002744 mRNA upstream 39505 846563 ~ 853730 (-) True AMCG00002744
AMCG00002750 mRNA upstream 97397 904455 ~ 907446 (-) True AMCG00002750
AMCG00002751 mRNA upstream 103667 910725 ~ 919475 (-) True AMCG00002751
TU173921 other downstream 616502 184121 ~ 189258 (-) True AMCG00002725
TU173884 other downstream 658920 144926 ~ 146840 (-) True G138245
TU174098 other upstream 1097 808155 ~ 811005 (-) False AMCG00002743
TU174097 other upstream 5687 812745 ~ 821591 (-) False AMCG00002743
TU174135 other upstream 115952 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 115952 923010 ~ 924234 (-) False AMCG00002752
TU174137 other upstream 115952 923010 ~ 925398 (-) False AMCG00002752

Expression Profile