RNA id: AMCG00002744


Basic Information

Item Value
RNA id AMCG00002744
length 2606
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00002744
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 846563 ~ 853730 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGCGGAACTGAGCAGGAAGCAGAGGCTGCGCTGTCACAGAGCCGAGAGCCACACCGACGCCGGACTGCGGACTCCCGAAACCCGCTGCTTACACCACTGTCTCCGCCCGCGGATGTTCCGATGGCGGCTGCTGCCGGCAGCGGCGGTGGGCCTGGCCATGCTCTCCCGGCGCCAGCACGGGTTCTCTGCGGCCGGGCCGAGCCGACGCCGCGTGATGATGGCGACTGTGGCAGGAGCCACGGGGGCTGCTATCAGCGCTGGGCTGCTGTGGAAGAGGGCCTACGCGGAGGCGGCCTCCTCCGTGAAGCATGACTTCCACGCCGAGGCGAGGGAGGAGGCTGGGAAGGGAGATGGGtccgaggaagaggaggagcaggCGGTAGAGTCCGGCGGCGAGGAGGGGGAGCTGCTCGAGGCCCGCAAGAAGAAACAGCGGCTGGGCTTCCGGGACCGCAAGGTGATGGAGTATGAGAACCGGATCCGGGCCTACTCCACCCCCGACAAGATCTTCCGCTACTTTGCCACTCTGAAGATCatctgGGTCTGGACCAGTTCCTGGTGAAGAGATACGATGGCAAGGTAAGCTGTGAGGGAGGGGCTCTGGGTTGTGTCGTCTGGCCATTGGCTGTGGCcgtggggggggcggggtgtTGTGGAGATATACAGGTGCAGCGTCTCGGCTGGGCTCTTCAGTGTGCTTACCCACTCTGCGGGAGTGTGGATCTTACTCAGTATGCGCACTTTACTGGGGTAAGATTGTGCgcgtctgtgtgtatgtgtgtgttcattatatacaaatttaacattatttttcattattacatGTTTCTGCTGCGGTTAGACGGAACATCCCACGTGTGGATCTGAGTGGATTGctccctctgtgtctgtttcctgTCTGTACTGTCCTGGTACCAGTTCTctgacacagtgcagtgtgtcgCTCTCCACAGAAGCTACACCGTGCCAGTTCTctgacacagtgcagtgtgtcacACTCCACAGAAGCGACACCGTGCAATGTGTTGCTCTCCACAGAAGCTACACCGTGCCAGTTCTCTGACACCGTGCAGTGTGTTGCTCTCCACAGAAGCTACACCGTGCCAGTTCTCTGACACCGTGCAGTGTGTCACTCTCCACAGAAGCTACACTGATCGAGCACATTCCTCCACAGGAAGCACTGCACTGAAACGTGTCGGGAGGCTCCCGCAGTGCTCGGTCAGCTGTCAGACCTGTGATGCACTGTAGAGTCCCAGACACAGGGGCACAAAGCTGATGTGCTCGAGTCTGCGGACGGTCTCTCCAGCTCGTGGAGAAGCGCCTGCCATTATTCAGACCCCCCCCAGCGACTGTTTGGTGGCCGTTGTGatgcattggtttgtttttggtatttgcCCGCTGAATGTGTGGGGCTCGTTTGGTTGCCTGAGCTTGTTAATTGTGCATGAGGCATGACTCCAGGGTGTGACTGACAGAGTAGATAGAGCGACAAACCCACGGCAGCGAGAACCGCACAGACGGGCTGGCGTGTGCCGAGCCACCTCCGTCCATCGCTGCCGACGGAGGCGTCTATCCTTCGCGCCAGTGTCTCTTGCTGTTGCTGCTCTGCGAGATTCGGCAAATGGCAAACCCTaactgtgtgcttgtgtgtgtgcgctggcAGCGTGTGCTCTGAGCCTTGTTTCAGTGCACCATTGAAGAGTTACTGCccgtcctctctgtgtctctttggCTGCTGTGTGCTGGCACCACCAGTACGGCTCGGTCCTGTTCTCATGTGCTCTCTCTCACCacttgtgctctctctctctttctcaccactctcgctctctctctctctctcctgtgcaGTTTGCAATGTCCAATGATCTCTATGTGCTGCTCTCTTGTCTCCACATAACCAATGAAACCCCATTCTCTTCACTTCTCTCCCCCTGTCCTGTCCTGCCCTCACCCTCCCTAACAGGATTTTTGGCAGGTACGAAGCGTGCAAGACTGcgcatgtgcgtgtgtgagacCGCGAGCGTGTAGCGTGTCCAACTGTTTCCAACCGTGTTTGTTCTGGACCCCTCTGTTCCTTCCTCCTCCCACCCCAGCCACTTTTCCCACCTTGCCCGATAGGAGGCCCTTTCAGTGTCAACAGtgcagggcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgtgtgcgtgcactcCTCCCAGGTGTCCGTGGCTGTGTAGGTATGTGTGTCTCGCTGCCCCGCCCTGGGAGTTCCCTGCAAGACCGGGCAGGCCTGGGGGGTTGTAAAGGGTTATACTGCAGAGCTGTACAAAGGTTGCAGAAGGAGAACCTGAAGGcttcggtgtgtgtgtgtgggcccCGGTGTCCTGTCTGCGCTGCTCTGTGGTTCTGAAAGGCCCGTCTTATTAGAACCCAACCTCTCCTGCCCTCCCCCATCCCTCTGCTCCCCCTCCATCATGCTTTCTGCGCCgcagctccctccctcccagcaTGCTTTGCTCCCGCTGCCTGAGTCCCCGGGAGTGGCTGCCGTGGAGTCGGCGCGGGTGATGAGCGGTGCGGG

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174099 lncRNA downstream 39505 805760 ~ 807058 (-) False AMCG00002743
TU174037 lncRNA downstream 41408 803573 ~ 805155 (-) True G138373
TU174034 lncRNA downstream 44796 801214 ~ 801767 (-) True G138371
TU174012 lncRNA downstream 98094 747494 ~ 748469 (-) True G138352
TU173983 lncRNA downstream 362960 483224 ~ 483603 (-) True G138324
TU174126 lncRNA upstream 41282 895012 ~ 898417 (-) False G138430
TU174128 lncRNA upstream 41282 895012 ~ 898417 (-) True G138430
TU174129 lncRNA upstream 41282 895012 ~ 898417 (-) False G138430
TU174258 lncRNA upstream 635832 1489562 ~ 1518053 (-) True G138535
TU174285 lncRNA upstream 1079630 1933360 ~ 1933995 (-) True G138559
AMCG00002745 mRNA downstream 2843 841258 ~ 843720 (-) True AMCG00002745
AMCG00002742 mRNA downstream 17394 828807 ~ 829169 (-) True AMCG00002742
AMCG00002743 mRNA downstream 29802 806818 ~ 816761 (-) True AMCG00002743
AMCG00002738 mRNA downstream 77740 763129 ~ 768823 (-) True AMCG00002738
AMCG00002737 mRNA downstream 95533 750635 ~ 751030 (-) True AMCG00002737
AMCG00002750 mRNA upstream 50725 904455 ~ 907446 (-) True AMCG00002750
AMCG00002751 mRNA upstream 56995 910725 ~ 919475 (-) True AMCG00002751
AMCG00002752 mRNA upstream 67058 920788 ~ 923672 (-) False AMCG00002752
AMCG00002749 mRNA upstream 91131 944861 ~ 951696 (-) True AMCG00002749
AMCG00002754 mRNA upstream 166583 1020313 ~ 1031864 (-) True AMCG00002754
TU174097 other downstream 24972 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 35558 808155 ~ 811005 (-) False AMCG00002743
TU173921 other downstream 657305 184121 ~ 189258 (-) True AMCG00002725
TU173884 other downstream 699723 144926 ~ 146840 (-) True G138245
TU174135 other upstream 69280 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 69280 923010 ~ 924234 (-) False AMCG00002752
TU174137 other upstream 69280 923010 ~ 925398 (-) False AMCG00002752
TU174506 other upstream 1864478 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 3084034 3937764 ~ 3950168 (-) False AMCG00002828

Expression Profile