RNA id: AMCG00002746


Basic Information

Item Value
RNA id AMCG00002746
length 2103
RNA type mRNA
GC content 0.60
exon number 8
gene id AMCG00002746
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 899823 ~ 904354 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGGATGCAGAGGGGATGGGCGTCCCGGGGGGGTCCCAGTCCCGGAGAGGACAGTGATTTGGGAGGGGGTTCAAGCCCTGGACCCGTGCTCGGCCTACATCAGCCTGAACGAGCCCTGGCGCAACACGGAGCACCACGTGAACGCGTCGGCGGGGGTGCCGCTGTGCGACAGCCACGTGGACGGGGAGTGGTACCGCTTCACGGGCATGGCCGGCGACGCCATGCCCACCTTCTGCATCGAGGAGAACCACTGCGGCACCCACGCGCCCATCTGGCTGAACGGCAGCCACCCGCACCGCGAGGAGGGCGTGGTGCGGCGCCAGGCCTGCGCCAGCTTCAACGGGGACTGCTGCCTGTGGAACGCCAGCCTGGAGGTGAAGGCCTGCGCAGGGGGGTACTACGTCTACCGCCTGCCCCGCCCCTCCGTCTGCTTCCATGTCTACTGCGGCCattTCTATGACATCTGTGACGAGACCGAGAATGACTCTGGAGAGTGCCAGTGTGCCAGTGGGACGACCCTGGGGCCGGACGGACAGACCTGCCTGGATGTGAATGAGTGTGAACAGGGCAATGGCGGCTGTGCGGAGGTGTGTGTGAACATGAAGGGCTCTCACCGCTGTGAGTGTGGCGTGGGCAGAGTGCTGGGCACCGACAGGCGGAGCTGCCAGGaGATTGAGGGTTGCCACAACAACAATGGAGGCTGCAGTCACAGCTGCTCCATGGTCCAGGGCTCCTACCGCTGCCACTGCCCCCGGGGGCTGGTGCTGACTGAGGACAGGCACAACTGCCAGGTGCCGGTGCAGTGCCAGCCCAGCTCTATCGAGGTGTCAGTGCCCAGGGAGCTGGTGGGGGGGCTGGAGCTCTTCCTGTCCAACTCGTCCTGCCGTGGTGTGTCCAACGGCACCCACGTCAACCTCCACTTCAGCCTGAAGACCTGTGGCACGGTGGTGGAGGTGAGCTTTCCACACGGCATGACACGATACAACTCTGCAGCCCAGCATCCTGGCACAGGAGGCTCTAACAGGGTGCAGAAGCAGGCTGGGGGCTCCTCTACCCAGCACATTCTCAATCTCTCCATCctctcccccatctctccctgCCCCGGCCAGGTGTCGGGCGAACGCATCGTGGCCACTAACCTGGTGACAGGGCTGCCGCGACAGAGCCCGGGCAGCAGCGGCGACGTCATCGTGAGGACCAGCAAGCTGCTGCTGCCGGTGACCTGCGAGTTCCCGCGGCAGTACGAGGTGTCGGACGGCTACCTGCCCAACCCCCGCGATGCCGCGCTGGAGATGCAGGGCCACAGCCACGGCCAGTTCCCCTTCAGCCTGGAGCTGTTCAAGAGCGCCGAGTTCTCGGAGCCCTACCGCGGCACCACCCCCTCCCTCAAACTGCACGACTCGCTGTTCTTCGGCGTGGAGCCGGCCGAGCGCGTGGACGGACTGGCCACGCTGGTGGAGAGCTGCTTCGCCACGCCCAGCCCCAAGGCCGACCAGGCGCTCAAGTATTACCTCATCAAGGACGGctGCATCTCAGATGAGACAGTGAAACAGgaggTGTTCCTGCACTGCCGTGTGCTGGTGTGTGGCTCTGAGGACGGGGCGTCACGCTGCTCTCAGGGCTGCCGGACTCGCCTGCGCCGCGACACGGACCACACCGCCCCCGCTGGCCTGCTGCACCAGCGCCTCCTCACCGGGGGGCCAATCATCATCCTCCCTGATGACTGACATCACCGCCCcgcagccaatcacagcctccacacacacacacacacacacacacacacacacacacacacacacacatactgaaaatatattgaaatacattttaaaatgttcatgtatatttaaatatatcaggCACAAGTTGACGTGAATTTACACTTATAAAATATGTCAAACATATCCTcactgacaaaatacaaaataaaatatattttaatccatATTCTGTGTAGTTATACCCTCACAATGTActtctatccatctatctatcaatctgtCTGTATCTAtcagtatatatttaactttgacatatatttataaaatagtgTTTCCTTGTAAAtcttttctgtctttcactgATTGTTTGCAATG

Function

GO: NA

KEGG:

id description
K24431 OPA3; oncoprotein-induced transcript 3 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174055 lncRNA upstream 50150 843528 ~ 849673 (+) True G138385
TU174048 lncRNA upstream 58095 819326 ~ 841728 (+) False G138379
TU174047 lncRNA upstream 58095 837209 ~ 841728 (+) True G138379
TU174044 lncRNA upstream 78258 813293 ~ 821565 (+) True G138378
TU174041 lncRNA upstream 88934 808896 ~ 810889 (+) True G138376
TU174074 lncRNA downstream 5033 909387 ~ 911080 (+) True G138393
TU174084 lncRNA downstream 33793 938147 ~ 938495 (+) True G138399
TU174181 lncRNA downstream 184085 1088439 ~ 1088816 (+) True G138475
TU174210 lncRNA downstream 471353 1375707 ~ 1395263 (+) True G138502
TU174289 lncRNA downstream 1033793 1938147 ~ 1939125 (+) True G138562
AMCG00002747 mRNA upstream 6631 890675 ~ 893192 (+) True AMCG00002747
AMCG00002740 mRNA upstream 63660 829429 ~ 836163 (+) True AMCG00002740
AMCG00002741 mRNA upstream 99807 776590 ~ 800016 (+) True AMCG00002741
AMCG00002735 mRNA upstream 139616 736334 ~ 760207 (+) True AMCG00002735
AMCG00002736 mRNA upstream 171336 718130 ~ 728487 (+) True AMCG00002736
AMCG00002748 mRNA downstream 20877 925231 ~ 930598 (+) False AMCG00002748
AMCG00002753 mRNA downstream 87230 991584 ~ 1008956 (+) True AMCG00002753
AMCG00002757 mRNA downstream 185585 1089939 ~ 1093079 (+) False AMCG00002757
AMCG00002760 mRNA downstream 199394 1103748 ~ 1107546 (+) True AMCG00002760
AMCG00002761 mRNA downstream 300464 1204818 ~ 1216164 (+) True AMCG00002761
TU174062 other upstream 1400 894828 ~ 898423 (+) True G138387
TU174076 other downstream 6756 911110 ~ 913532 (+) True G138394
TU174081 other downstream 22115 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 22115 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 184924 1089278 ~ 1092952 (+) True AMCG00002757
TU174182 other downstream 191585 1095939 ~ 1097475 (+) True G138476

Expression Profile