RNA id: AMCG00002747


Basic Information

Item Value
RNA id AMCG00002747
length 888
RNA type mRNA
GC content 0.62
exon number 8
gene id AMCG00002747
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 890675 ~ 893192 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCCGGAGACGAGACTCACCCTGGGTCAGAGACTGCTGTGTTCTTCCGTCTCCGTGCCCCCCGAAGAGGTGAGCGTCCTGTACCACAATGGGCTGCCCGTGGTGTCGGTCAGCCTGCCATCTCGGAAGGAGCGCTGCCAGTTCACACTGAAGCCCATCTCCGACACCGTGGGCGtgttcctgcaacagctgcagGACGAGGACAGGGGCATCGACCGCGTTGCCATCTACTCCACAGatgGGGCACGGGTCGCCTCTTCCACAGGAATTGACATCCTGCTCTTGGACGACTTCAAGCTGGTCATCAACGACGTCACACACCACCGTCTGTCCCACGAGACGGCGGAGACGCTGGGCGATGTGAAGATGCTGGTGCAGCAGCTCTACACCACCCTGCGCATCGAGGAGCACCAGCTTAGCAAAGAGCGCCAGCTGATCGGCCGGCTGGAGGACCTCAACTCGCAGCTGCTGCCCCTGGAGAAGATGCGGGAGGAGCTGGGCCGGAAGGCGGAGCGGCGCACTACGTGGGTGCTGTGGGGGGGGCTGGCGTACATGGCCACGCAGTTCGGGGTGCTGGCGCGGCTCACCTGGTGGGAATACTCCTGGGACATCATGGAGCCCGTCACCTACTTCATCACCTACGGCTCGGCCATGTTCATGTACGCCTACTTCGTCCTCACGCGCCAGGAGTACCTGTACCCCGACGCCCGGGACCGGCAGTACCTGCTGTTCTTCCACAAAGGCGTGAAGAAGAACCGCTTCGATGTGGACAAGTACAACCAGCTGAAGGATGCCATCGCCGAGGCTGAGTTGGACCTAAAGCGCCTGAGGGATCCTCTACAGCTGCAGCTCCCCCTCCAGCAGATCTCTGCCGGCAAGGATTGA

Function

GO: NA

KEGG:

id description
K20858 MCU; calcium uniporter protein, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174055 lncRNA upstream 41002 843528 ~ 849673 (+) True G138385
TU174048 lncRNA upstream 48947 819326 ~ 841728 (+) False G138379
TU174047 lncRNA upstream 48947 837209 ~ 841728 (+) True G138379
TU174044 lncRNA upstream 69110 813293 ~ 821565 (+) True G138378
TU174041 lncRNA upstream 79786 808896 ~ 810889 (+) True G138376
TU174074 lncRNA downstream 16195 909387 ~ 911080 (+) True G138393
TU174084 lncRNA downstream 44955 938147 ~ 938495 (+) True G138399
TU174181 lncRNA downstream 195247 1088439 ~ 1088816 (+) True G138475
TU174210 lncRNA downstream 482515 1375707 ~ 1395263 (+) True G138502
TU174289 lncRNA downstream 1044955 1938147 ~ 1939125 (+) True G138562
AMCG00002740 mRNA upstream 54512 829429 ~ 836163 (+) True AMCG00002740
AMCG00002741 mRNA upstream 90659 776590 ~ 800016 (+) True AMCG00002741
AMCG00002735 mRNA upstream 130468 736334 ~ 760207 (+) True AMCG00002735
AMCG00002736 mRNA upstream 162188 718130 ~ 728487 (+) True AMCG00002736
AMCG00002739 mRNA upstream 183474 700320 ~ 707201 (+) True AMCG00002739
AMCG00002746 mRNA downstream 6631 899823 ~ 904354 (+) True AMCG00002746
AMCG00002748 mRNA downstream 32039 925231 ~ 930598 (+) False AMCG00002748
AMCG00002753 mRNA downstream 98392 991584 ~ 1008956 (+) True AMCG00002753
AMCG00002757 mRNA downstream 196747 1089939 ~ 1093079 (+) False AMCG00002757
AMCG00002760 mRNA downstream 210556 1103748 ~ 1107546 (+) True AMCG00002760
TU174062 other downstream 1636 894828 ~ 898423 (+) True G138387
TU174076 other downstream 17918 911110 ~ 913532 (+) True G138394
TU174081 other downstream 33277 926469 ~ 927621 (+) False AMCG00002748
TU174083 other downstream 33277 926469 ~ 930598 (+) True AMCG00002748
TU174180 other downstream 196086 1089278 ~ 1092952 (+) True AMCG00002757

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012407 True 1323 mRNA 0.52 9 NC_007124.7 4722200 ~ 4848889 (-)