RNA id: TU174081



Basic Information


Item Value
RNA id TU174081
length 451
RNA type TUCP
GC content 0.57
exon number 4
gene id AMCG00002748
representative False

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 925231 ~ 930598 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGCCTGACGTTGTAAAGTTGCAATCTTTTGTGCTCTGCTGGGACTGTTTGCTGTgtctgtgattttgtttctgtcCTACAGAGACCCGCTTCATGCGTTGAAAACAAGAGGATACAGTGTGGGAGTCCTGTAGCAGTTTGAGAGATTCAGAGagaagacagagggagagagctgCTGGACAATGCGTTGGTCTCTGCAGGGTCCCCTCAGAATTGGGCTCCTGGGCACCCGTCACTGCTCCAGCTATGTGTCCCGTGTGAGATACCTGCAGCATCTGAAGGAGGACGAGGGCGCGTGTCGGGGGGCGCTGCAGGCCGGCAGCTTCCTCCTCTTCCACAAGCTGGCGCCGCTGCTGCAGAAGGCTGAGGCGGGGGGGTACCGGGCCGTCAGACTGTCAGCAGCGGATGTGAAAGGACTGCTGGGAAAACTGGGCAAGGATGAACATCTGCTN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU174074 lncRNA upstream 15389 909387 ~ 911080 (+) True G138393
TU174055 lncRNA upstream 76796 843528 ~ 849673 (+) True G138385
TU174048 lncRNA upstream 84741 819326 ~ 841728 (+) False G138379
TU174047 lncRNA upstream 84741 837209 ~ 841728 (+) True G138379
TU174044 lncRNA upstream 104904 813293 ~ 821565 (+) True G138378
TU174084 lncRNA downstream 10526 938147 ~ 938495 (+) True G138399
TU174181 lncRNA downstream 160818 1088439 ~ 1088816 (+) True G138475
TU174210 lncRNA downstream 448086 1375707 ~ 1395263 (+) True G138502
TU174289 lncRNA downstream 1010526 1938147 ~ 1939125 (+) True G138562
TU174333 lncRNA downstream 1132756 2060377 ~ 2060604 (+) True G138593
AMCG00002746 mRNA upstream 22115 899823 ~ 904354 (+) True AMCG00002746
AMCG00002747 mRNA upstream 33277 890675 ~ 893192 (+) True AMCG00002747
AMCG00002740 mRNA upstream 90306 829429 ~ 836163 (+) True AMCG00002740
AMCG00002741 mRNA upstream 126453 776590 ~ 800016 (+) True AMCG00002741
AMCG00002735 mRNA upstream 166262 736334 ~ 760207 (+) True AMCG00002735
AMCG00002753 mRNA downstream 63963 991584 ~ 1008956 (+) True AMCG00002753
AMCG00002757 mRNA downstream 162318 1089939 ~ 1093079 (+) False AMCG00002757
AMCG00002760 mRNA downstream 176127 1103748 ~ 1107546 (+) True AMCG00002760
AMCG00002761 mRNA downstream 277197 1204818 ~ 1216164 (+) True AMCG00002761
AMCG00002759 mRNA downstream 323204 1250825 ~ 1265977 (+) True AMCG00002759
TU174076 other upstream 12937 911110 ~ 913532 (+) True G138394
TU174062 other upstream 28046 894828 ~ 898423 (+) True G138387
TU174180 other downstream 161657 1089278 ~ 1092952 (+) True AMCG00002757
TU174182 other downstream 168318 1095939 ~ 1097475 (+) True G138476
TU174214 other downstream 473668 1401289 ~ 1402429 (+) True G138506
TU174215 other downstream 479425 1407046 ~ 1410088 (+) False AMCG00002762
TU174426 other downstream 1564465 2492086 ~ 2494594 (+) True AMCG00002784

Expression Profile