RNA id: AMCG00002749


Basic Information

Item Value
RNA id AMCG00002749
length 1689
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00002749
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 944861 ~ 951696 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAGACGAGGAAGACGGACACGCGGAATACAGTCCCATACCTCGGGTGTTGCTGACAGTCTGATAACGTGCGTGCGTGATGACGTAGGCGTGGGATTGACGTGTGCGTGAGGACGTTGACGAGCCCACTTGATTGAGAAGTGTCCAATGTGGCGAGAACCTGGAGAAGACACCATGAAGGACAGCCTGCCTTCAGACACGCTAGATTTAAGCAGGAAGAGCCTCCAGTGTGTGTCAGAGGATGTTCTGAAGATGTCAAGGATAAAACATTTATACCTCAGAGGCAATGAACTGAGCTCTGTTCCCGAGCATCTTTTCAGCAGTTTATCGCATCTGGTCTGGCTGGATGTGAGGAATAACAAAATTACTCGCCTGCCGTCGGAAATCGGGCAGCACAGGTGTCTGAAAACATTACTGTTGGAAGGGAATCCTATTAAAGAACTGCCAGTAGAGTTGGGTAATGTGAACACGCTTAGGGCGCTGAGCTTGAGACACTGTCCTATTGAATTCCCTCCTCAAGACGTTGTGCATCAAGGCCTGCACTCTATCCTGAGCTTCCTGAGGAGCAAGATGGCTGACAAACCTGTCGATGTACGAGATTCTGAGCAAGAGGTTCCCCCGGTTGAGAAGCTGCAGCTGACAGAGCTGGCACACAGTCTCGATGTTTCTGAAGAGTGGGCGAGCGACCGGGAACGGCAGCGGTTCGAGGAGCTGAAGCAGGAGTTGCGGCGGATGGAAGAGGCCGATATCGGGGACGCCGTCTCCCACGAGACCCTGCGCCCGTCACATCCCACGGCCACGGACAGCGATGGCGGCCCCAGAAGCCGAGTCACTCCGAGGAAAAAGGACGCGTTTAAGGGTACGTTCCCAGAGCTCCCACCACGTGGCCTACAGGGTCGAAGGAAAAGCGAGGAGCTCAGACTGGCTGCCCTGAAGGAGTGTAAAGAAAGACAGGCCGTACTGGAGCAGAGGAGgaaGGATCAAGAGCTGCTGAGAGATTGGAGGGCACAGACGAAATCGATGCAAGAGAAAAGAGAGCGGGAACACAAACAGGGGAGAGAGGGCCCCGGAAGAAGAGACGAGGTGGTGAAAAGTGCACCCTATGCAACGCATCCGGAGCTTCACGGACGCATGCATCTGAACATCCAGGGGCCGGGGGCGAGCACACAGAATCGCAGGACAGAGAGATCTTCACAGGAGAGGGCCGCTGGAGAGCTGGAGCAGCGAGTCCGCGCACACGTCCAGGCGGTGCAAGAGCGCCGGAGAGCACCGCGGGGCTCAGCGCAGGAGGAGCAGGCTGCGGCGTGGCAAGACATGGAGGCCGCGCGGCAGCTCCGGTGTGAAGCGGCTCAGCGGACGCTGGAAAGCGATGCTCCTCTGCAGCGTTGCTTCACCGGCTTCACCGGAGAGACGGCGGCGCCAGACTGAGAGCGGGCCTCCTGGCGTGTGTCCGACGCCGACTGCGCGAGGCGTCGTTCCTGAGAGAGGCGTGGATGGGCAATGATGACAGAGGAGGATGTCTCTACTGCTCAGTTCTGCTCTTTACACTAATAAAGAACAAAGTGTTGCCAAACATGTGTTGCTGGATTTCATGCCCCCCCTTTTACTGGCCTGATTGAGGTGACGTCACACAAGGGGTCTGCAGAATGGTCACATGGTCTATAACCTCTCATCACGTTTCAGCATCTTG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174126 lncRNA downstream 46444 895012 ~ 898417 (-) False G138430
TU174128 lncRNA downstream 46444 895012 ~ 898417 (-) True G138430
TU174129 lncRNA downstream 46444 895012 ~ 898417 (-) False G138430
TU174099 lncRNA downstream 137803 805760 ~ 807058 (-) False AMCG00002743
TU174037 lncRNA downstream 139706 803573 ~ 805155 (-) True G138373
TU174258 lncRNA upstream 537866 1489562 ~ 1518053 (-) True G138535
TU174285 lncRNA upstream 981664 1933360 ~ 1933995 (-) True G138559
TU174334 lncRNA upstream 1132202 2083898 ~ 2084097 (-) True G138594
TU174435 lncRNA upstream 1550417 2502113 ~ 2502314 (-) True G138678
TU174481 lncRNA upstream 1739734 2691430 ~ 2691869 (-) True G138720
AMCG00002752 mRNA downstream 21189 920788 ~ 923672 (-) False AMCG00002752
AMCG00002751 mRNA downstream 25386 910725 ~ 919475 (-) True AMCG00002751
AMCG00002750 mRNA downstream 37415 904455 ~ 907446 (-) True AMCG00002750
AMCG00002744 mRNA downstream 91131 846563 ~ 853730 (-) True AMCG00002744
AMCG00002745 mRNA downstream 101141 841258 ~ 843720 (-) True AMCG00002745
AMCG00002754 mRNA upstream 68617 1020313 ~ 1031864 (-) True AMCG00002754
AMCG00002756 mRNA upstream 81750 1033446 ~ 1034599 (-) True AMCG00002756
AMCG00002755 mRNA upstream 83851 1035547 ~ 1069394 (-) True AMCG00002755
AMCG00002758 mRNA upstream 143299 1094995 ~ 1103898 (-) True AMCG00002758
AMCG00002764 mRNA upstream 443315 1395011 ~ 1410128 (-) True AMCG00002764
TU174137 other downstream 19463 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 20627 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 20627 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 123270 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 133856 808155 ~ 811005 (-) False AMCG00002743
TU174506 other upstream 1766512 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 2986068 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 3049954 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 6110777 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 6397115 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile