RNA id: TU174137


Basic Information

Item Value
RNA id TU174137
length 842
RNA type TUCP
GC content 0.62
exon number 4
gene id AMCG00002752
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 920788 ~ 925398 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCCCAGCCTGTGTCGCACTCTCTTGCAGCCTCACTTACCTGTGGTACCTGTAGTGCCCTGCCGGTGCAGTGTGGGAGAACAGCAGGTTGAGAGGCCAGAGTGTTTCCTCCCCAGCAGAGCCCACACAGCCCACCCACTGCCCAGGACCCCCACACAGGGGCCACATCGGGACACTGCCGTTGCTCATTGCATCGCTGCTGCACCCTGTTCTGGCCTACAGAACATGTCCTTAAATAAGTGTCCTGGACATCAGGACCtgcagtatttatgtatgttctCATTGCTCAGCTAGTCAGCACActtggagtgagagagagagacgagcaGGCCGACACGATGGGGTCTGTGCCAGTGCAGTGTGGGAGCtggggccgggccgggccgggctgggctgggctgggccaTGGGTGAGGTCTGAACTAGGCTGCTCTCGCCCTGCTGCGCTGTGGGGAGGAGTGAGGCGCAGGCACTGTGTCTGAAGCGCTGCCTGCAGCTGCATGCTCTGCATTCCTGCCCTGCCCTTTGTCTGCAGCTCACAGCCGGGGCCGGGCACCctggAGCTGTGGTGACAAGATGGCGCGCTGTGCGGTGTGGcatgtgctgctgctgggggggCTGCTCATGGCAGCGGAGGCGAGCAATGACTTCTTCACATCCATCGGCCAGATGACCGACCTGCTGTCCACAGAGAAGGACCTGGTTACCTCTCTGAAGGACTACATCAGGGCCGAGGAGAGCAAGCTCGAGCAGGTCAAACAGTGGGCGGAGAAGCTGGACAAACTGACCGCCGTGGCCACGCAGGACCCCGAGGGCTTCCTGGGCCACCCGGTCAACGCCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174126 lncRNA downstream 24593 895012 ~ 898417 (-) False G138430
TU174128 lncRNA downstream 24593 895012 ~ 898417 (-) True G138430
TU174129 lncRNA downstream 24593 895012 ~ 898417 (-) False G138430
TU174099 lncRNA downstream 115952 805760 ~ 807058 (-) False AMCG00002743
TU174037 lncRNA downstream 117855 803573 ~ 805155 (-) True G138373
TU174258 lncRNA upstream 564164 1489562 ~ 1518053 (-) True G138535
TU174285 lncRNA upstream 1007962 1933360 ~ 1933995 (-) True G138559
TU174334 lncRNA upstream 1158500 2083898 ~ 2084097 (-) True G138594
TU174435 lncRNA upstream 1576715 2502113 ~ 2502314 (-) True G138678
TU174481 lncRNA upstream 1766032 2691430 ~ 2691869 (-) True G138720
AMCG00002751 mRNA downstream 3535 910725 ~ 919475 (-) True AMCG00002751
AMCG00002750 mRNA downstream 15564 904455 ~ 907446 (-) True AMCG00002750
AMCG00002744 mRNA downstream 69280 846563 ~ 853730 (-) True AMCG00002744
AMCG00002745 mRNA downstream 79290 841258 ~ 843720 (-) True AMCG00002745
AMCG00002742 mRNA downstream 93841 828807 ~ 829169 (-) True AMCG00002742
AMCG00002749 mRNA upstream 19463 944861 ~ 951696 (-) True AMCG00002749
AMCG00002754 mRNA upstream 94915 1020313 ~ 1031864 (-) True AMCG00002754
AMCG00002756 mRNA upstream 108048 1033446 ~ 1034599 (-) True AMCG00002756
AMCG00002755 mRNA upstream 110149 1035547 ~ 1069394 (-) True AMCG00002755
AMCG00002758 mRNA upstream 169597 1094995 ~ 1103898 (-) True AMCG00002758
TU174097 other downstream 101419 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 112005 808155 ~ 811005 (-) False AMCG00002743
TU173921 other downstream 733752 184121 ~ 189258 (-) True AMCG00002725
TU173884 other downstream 776170 144926 ~ 146840 (-) True G138245
TU174506 other upstream 1792810 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 3012366 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 3076252 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 6137075 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 6423413 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile