RNA id: AMCG00002753


Basic Information

Item Value
RNA id AMCG00002753
length 1200
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00002753
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 991584 ~ 1008956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAATCTCTGCGATGTCTGCCTGGGATGACACTCACTTTGTTGTTTCCTCTTCGCAGGTGTGCATCGTCCAGAAGAGGGACACCGAGAAGATGTACGCCATGAAGTATATGAACAAACAGCAGTGCATTGAGAGAGACGAGGTCCGAAACGTCTTTAGAGAGCTAGAGATCCTACAGgaaattgaacatgtttttttagtaAACCTCTGGTACTCGTTTCAGGACGAGGAGGACATGTTCATGGTGGTGGACTTGCTGTTGGGAGGAGACTTGCGCTACCATTTACAGCAGAACGTCCAGTTTACCGAAGAGGCCGTGAAGCTGTACATCTGTGAGATGACTCTGGCTCTAGACTATCTACAGAGTCAGCACATTATTCACAGGGACATCAAACCAGACAATATTCTACTCGACGAACAAGCACCAGAAATATTCCACTCCTTTGTAAACGGGGGGACCGGCTACGCTTTTGAGGTGGACTGGTGGTCCCTGGGAGTGACAGCCTATGAAGTCCTGCGCGGATGGAGGCCGTACGAGATCCACGCCAGCAACACCGTGGAGTCGCTGCTGCAGCTGTTCAGCACCGTGAGCGTGCAGTACTCCTCCGCCTGGTCCAAGGACCTGGTGTCCCTGCTGAGGAAGCTCCTGACTGTCAACCCCGAGCATCGCTTCTCTTGCCTTACGGATATGCAGTCCTTCCCATACCTCTCAGACGTCAACTGGGATGCGGTTTCTGAGAAGAAGGTGGAACCGGGCTTTGTCCCAAACGTAAGCACACTTTCCTCTCACGGGCTTCGACACTTTGGTCTGACACGGCCCTGTAACGAGCGCACGTTGCTCTCACAGAAAGGACGCCTGCACTGCGACCCGACCTTTGAACTCGAGGAGATGATCCTGGAGTCCAGACCTCttcacaagaagaagaagagactGGCCAAGAACAAGTCAAGGGACAACAGCAAAGACTCCCAGTCAGAGAATGATTATCTTCAGGAGTGCCTAGATGTTGTGCAGCAAGAATTTATGATCTTCAACAGAGAGAAGTTGAAAAAGCCACAGGACGAGGAACCAGGCTCCTCCGAGGCCGCGGCGGAAGGGGAGACGGACGCCGAGGGGGCAACCGAGGAGGAAGCCGAGGCCGAGACGTCGAACCTGAACATGTGCAGCTCGGTTTgctcctccagcagcagctgctAG

Function

GO: NA

KEGG:

id description
K08793 STK32, YANK; serine/threonine kinase 32

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174084 lncRNA upstream 53089 938147 ~ 938495 (+) True G138399
TU174074 lncRNA upstream 80504 909387 ~ 911080 (+) True G138393
TU174055 lncRNA upstream 141911 843528 ~ 849673 (+) True G138385
TU174048 lncRNA upstream 149856 819326 ~ 841728 (+) False G138379
TU174047 lncRNA upstream 149856 837209 ~ 841728 (+) True G138379
TU174181 lncRNA downstream 79483 1088439 ~ 1088816 (+) True G138475
TU174210 lncRNA downstream 366751 1375707 ~ 1395263 (+) True G138502
TU174289 lncRNA downstream 929191 1938147 ~ 1939125 (+) True G138562
TU174333 lncRNA downstream 1051421 2060377 ~ 2060604 (+) True G138593
TU174384 lncRNA downstream 1452682 2461638 ~ 2463636 (+) True G138634
AMCG00002748 mRNA upstream 60986 925231 ~ 930598 (+) False AMCG00002748
AMCG00002746 mRNA upstream 87230 899823 ~ 904354 (+) True AMCG00002746
AMCG00002747 mRNA upstream 98392 890675 ~ 893192 (+) True AMCG00002747
AMCG00002740 mRNA upstream 155421 829429 ~ 836163 (+) True AMCG00002740
AMCG00002741 mRNA upstream 191568 776590 ~ 800016 (+) True AMCG00002741
AMCG00002757 mRNA downstream 80983 1089939 ~ 1093079 (+) False AMCG00002757
AMCG00002760 mRNA downstream 94792 1103748 ~ 1107546 (+) True AMCG00002760
AMCG00002761 mRNA downstream 195862 1204818 ~ 1216164 (+) True AMCG00002761
AMCG00002759 mRNA downstream 241869 1250825 ~ 1265977 (+) True AMCG00002759
AMCG00002762 mRNA downstream 397655 1406611 ~ 1410058 (+) True AMCG00002762
TU174083 other upstream 60986 926469 ~ 930598 (+) True AMCG00002748
TU174081 other upstream 63963 926469 ~ 927621 (+) False AMCG00002748
TU174076 other upstream 78052 911110 ~ 913532 (+) True G138394
TU174062 other upstream 93161 894828 ~ 898423 (+) True G138387
TU174180 other downstream 80322 1089278 ~ 1092952 (+) True AMCG00002757
TU174182 other downstream 86983 1095939 ~ 1097475 (+) True G138476
TU174214 other downstream 392333 1401289 ~ 1402429 (+) True G138506
TU174215 other downstream 398090 1407046 ~ 1410088 (+) False AMCG00002762
TU174426 other downstream 1483130 2492086 ~ 2494594 (+) True AMCG00002784

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037948 False 5579 lncRNA 0.44 12 NC_007132.7 42891618 ~ 42967951 (+)