RNA id: AMCG00002754


Basic Information

Item Value
RNA id AMCG00002754
length 3380
RNA type mRNA
GC content 0.46
exon number 14
gene id AMCG00002754
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1020313 ~ 1031864 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGTTCAAGTGAAGCTAAAAACACGCATCGATTTGCAGAGCATTGCGATGAGATGTATTAAGAGCCTCACTGAGCCTGTGCCAGTGCAGGCCGGCTGCGGTGTCATTAGGCGCTGGATGCGTCTGGCATGCTAATCAGGCAGATGGCAGGCGAGCAGCTTTGTGCGTAGAGGCAGCACTGCGTCtggcacagcagcagcaccgACACACCAGACACATTGTATCCGTCTGCACCGAGCCGccccgagccgagccgagccgagccgaacCGAGCCGAACCGAGCCCACAGCCAGCCGCGTCCCGTCCGCCGCACTCACCCCGCCCTGGCACTGAAGCACGGCCGGCATGTCTTACCAAGGCAAGAAGAGCATCCCTCGCCTCACGagtGACCGCCTCATTATCAAAGGTGGAAAGATTGTCAACGATGACCAGTCTTTTTATGCTGATGTCTACGTAGAAGACGGGATCATTAAGCAAATAGGAGAGAATCTCATTGTCCCTGGAGGCGTGAAGACTATTGATGCCTACGGTCACATCGTGATTCCCGGTGGAATAGATGTCAACACCTGTCTTCACATGCCGTACCTGGGCATGACCCCGGCTGATGACTTTTACCACGGCACTAAAGCCGCCCTGGCTGGGGGAACCACCATGATCATTGACCACGTCCTCCCTGAACCCGGGTCAAGTCTTCTTGCAGCTTACGATCAGTGGAGAGACATCGCGGACAAGAAATCCTGCTGTGATTATTCCCTTCATATGGATATCACACACTGGCATGAAGGCCATATAGAAGAACTGGAAGCATTGGTCAAGGACAAAgGTGTAAATTCATTTCTGGTCTTCATGGCCTATAAGGACATGTATCAGTGCTCTGATTCTCAGatatatgaaatattaagcATTCTAAGAGACCTGGGGGCCATTGCTCAAGTACATGCAGAAAATGGAGATATTATTCAAGAGGAGCAGAAAAGATTGCTAGACCTTGGGATCACAGGTCCAGAAGGGCACGTTCTGAGTCACCCAGAGGAGGTTGAGACTGAAGCCGTGTACCGGGTATTAACCATAGCCAAACAGGCCAACTGCCCACTGTACATCACAAAAGTCATGAGCAAGACTTCTGCCGACGTTATTGCCCAGGCCCGAAGGAAAGgtaTGGTGGTTTATGGGGAACCAATCACAGCCAGTCTTGGAACCGATGGCTCTCATTATTGGAGTAAGAACTGGGTGAAAGCGGCTGCCTTTGTCATGTCCCCTCCGGTCAACCCAGATCCCAGCACTCCCGACTACCTTAACTCACTGCTCTCCTGTGGAGATCTGCAAGTAACTGGCAGTGCCCACTGTACTTTTACCACGGCCCAGAAAGCGGTCGGAAAAGACAACTTTACACTGATACCTGAAGGGACCAATGGAATCGAGGAACGGATGTCAGTAGTTTGGGAAAAATCTGTGGCAACGGGGAAGATGGATGAGAACGAGTTTGTCGCTGTGACGAGCACCAACGCCGCCAAGATCTTCAACCTCTACCCCCGGAAGGGACGGATAGCCGTTGGCTCGGATGCGGATATCGTCATCTGGAACACAAAGGAGACCAAAATAATCTCCGCTAAATCACACAACTTGACCGTGGAGTGCAACATCTTCGAGGGAATGGAGTGCCACGGAGCTCCTGTGGTGGTCATCAGCCAGGGTAAAATTGTGATGGAGGCTGAGAAACTCAGTGTCACCGAAGGATCTGGTCGCTTCATCCCACGGAAGACATTCCCGGATTATGTTTACAAACGAATAAAAGCCAGGAACAGGCTCGCCGATATCCGCGGCGTTCCAAGAGGACTCTATGACGGCCCAGTCCATGATGTCACCACAGCCACCAAAGCTGTGGCCCCCACTCCCACCTCCAGGGGCTCGGCCTGTCCCGGCAAAGCCCAGATGGTCCCGGTCCGGAACCTGCACCAGTCCGGGTTCACCCTGTCcgGCAATCAGATGGACGACCACATTCCCAGACGCACTGCTCAGAGGATCGTTGCCCCCCCTGGTGGCAGATCTAATATAACTTCCCTTTCGTGATTTCGGGTGTGCAAAACAGCTTGTGTCCGGGCTGATGTTTTAAAGGGGAATACTCTAGTATCAAACACTGCCAATAATAGTACACCGGAATAGCAGACAGGGACAGCGCACTGGTAGTTCTGTTGCTTCATGAATGCCATCATACCAACTGCCAAAATACTACTAGCAAAAGAAAAAGTTACCACATATAACCtgaagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaataaAGTTTTTACTCCTGCCTTTCTCTGTTGGATCTCCAAAGCATGCTCCTAGAACCGAACAGCCATCGCCTGACACTTATTATTCGCTGCTGTACGCCATGAATTAAAGCTGAGACTTTGGTTTGAATTTATTGGATTAGTTGCTGTGCTGCGTTATAGTTTTacttaaaatcacaaatattcGCTGCTGCTTTAGAACAAGGTTCGGATTAAAGGAAGACAGTAGTTTCAGTGTATTAAGGGTACGGAAATCAATGTAGTGCTGCTCTTTGTACAGTACTATGAGTCTGTTAGTTATTGGCCATTGATTGACTCTGGATTTGACCTTTAGGATTCAAATGTTTCTTTCCAGGTTACATGAAGACCCTTTTTATCGAAAGCTAAGGTTTCGtcctgttaatatatatattacaaatattagcaaagagaaaaacaatatataaccCGAGTGATAGTGTGCAGACTTCTTTCTAAAGTCTTAATTTCTTAATAGACTGATTCTCCTCAGAGGTCATTTGGAATTGTAGACTTGCCTAGATTTGACTTGTGATTCTCTGGCTCTAGATGTTCATAACCACAGACTGTCTCCTTCGTAGTgtggatttaatatttttgtattttttttttttttttaaacaaaatcttaaTCTGGTGCTGTAAAACCATATACTGTACATGGCCAAATACAAAGGTCATGGATTGAAAAACAATGGTTTTGAAAGTCACTTTTAAAATCTGGTTTAAATTTTGAGTTGTCTATTCTTGTATTGTTCTTCTACCTTTGTAATCCTCGTTTGTACTTTTCAACTTCCTACAAAAATGACAATTTGTACAACCTAAATACTTGAATTAACTTTGTTtcgcttttttattttttaaacgcaATGGAAAGTTTTTATGGTTCAGTAAGTATCTGGAACTGTAATCCACAGTGGTGTGTAGTATTCGTCTGAGGGAAAACTGGTCTGTCAGTTGATCTTTTCTTacctttttctgtgtttgtctgtaaaTATTggattaaaaatatgcatgttctacaaaacactgttttgtcttgaataaagtttgtgaaataa

Function

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174126 lncRNA downstream 121896 895012 ~ 898417 (-) False G138430
TU174128 lncRNA downstream 121896 895012 ~ 898417 (-) True G138430
TU174129 lncRNA downstream 121896 895012 ~ 898417 (-) False G138430
TU174099 lncRNA downstream 213255 805760 ~ 807058 (-) False AMCG00002743
TU174037 lncRNA downstream 215158 803573 ~ 805155 (-) True G138373
TU174258 lncRNA upstream 457698 1489562 ~ 1518053 (-) True G138535
TU174285 lncRNA upstream 901496 1933360 ~ 1933995 (-) True G138559
TU174334 lncRNA upstream 1052034 2083898 ~ 2084097 (-) True G138594
TU174435 lncRNA upstream 1470249 2502113 ~ 2502314 (-) True G138678
TU174481 lncRNA upstream 1659566 2691430 ~ 2691869 (-) True G138720
AMCG00002749 mRNA downstream 68617 944861 ~ 951696 (-) True AMCG00002749
AMCG00002752 mRNA downstream 96641 920788 ~ 923672 (-) False AMCG00002752
AMCG00002751 mRNA downstream 100838 910725 ~ 919475 (-) True AMCG00002751
AMCG00002750 mRNA downstream 112867 904455 ~ 907446 (-) True AMCG00002750
AMCG00002744 mRNA downstream 166583 846563 ~ 853730 (-) True AMCG00002744
AMCG00002756 mRNA upstream 1582 1033446 ~ 1034599 (-) True AMCG00002756
AMCG00002755 mRNA upstream 3683 1035547 ~ 1069394 (-) True AMCG00002755
AMCG00002758 mRNA upstream 63131 1094995 ~ 1103898 (-) True AMCG00002758
AMCG00002764 mRNA upstream 363147 1395011 ~ 1410128 (-) True AMCG00002764
AMCG00002767 mRNA upstream 509322 1541186 ~ 1551984 (-) True AMCG00002767
TU174137 other downstream 94915 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 96079 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 96079 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 198722 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 209308 808155 ~ 811005 (-) False AMCG00002743
TU174506 other upstream 1686344 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 2905900 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 2969786 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 6030609 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 6316947 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile