RNA id: AMCG00002757


Basic Information

Item Value
RNA id AMCG00002757
length 2140
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00002757
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1089278 ~ 1093079 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTCCTGGGTGGAGCTGCACTTCAATAATAATGGAAACAGCGGCGTGGCGCAGAGCGGAGGGCAGGAACAGGTGCCAGCGTCCGTCCACAACGGAGACATGGAGAAAATGCTGCTCGATGCCCAGCACGAGTCTGGCCGAAGCAGCTCCAGGGGCAGCTCTCACTGCGACAGTCCTCCAAGATCCCAGACTCCTCTGCATCTCCGCAGGGGCTCGGAGGTGCACAGCAGCGGGGAGAAAAACAGCTCCCAGTCTGAAGAGGATTATCTTGAAAGGAGGAGAGAAGTAGAAAACCTCATGAAGAAAAATGCCGACTGGATCTGGGACTGGTCCAGCCGACCCGAAAACGTGCCACCAAAGGAGTTCCTGTTCAAGCACCCCAAACGTGCCGCCACGCTCAGTATGAGGAACACCAGCGTGATGAAGAAGGGAGGGATCTTCTCGGCCGAGTTTGTGAAGGTTTTCCTTCCATCACTGCTCATCTCTCACATCCTGGCTGTGGGTCTCGGGATTTATATCGGAAGACGTCTGACGACCTCTACAAGTACTTTCTAAACGGGGCGCGGCGCCGTCATCTTCACCCTTACCAGCGGGCATGCTTCCCTGTCACCCTTCCTGGACACAGACGAATGCGATCACCTGACTTGCTAACTTGTGTTTGCCGAGTGCTGTGCTGCTTCTGTTCTCTCGTGAAAACTGCCTCCATGCTAGGATGTCTAAAATCTGGACTGCGAGTAAGTGGCTAATTTACTGTTTTCTGAGCCGTTTTCTCGGCAAGATAAGGACCCAAGTTCTGTAATCCTTCGGTAATCGTCTCTCATTGGGTAACAAAGTGCTCGATCATTGTGACTCATGATTGTATAGCTTAACTGATGTTAGTTCTACAAATTCAGTGATAATGACTGTAGATAAAGTCTGTTTTCTTTGAATCCAGCTTTGCTGACTTGTAATGAGATGTGCACGTGAGCATTACTCCTGAAAGAGCTGcaattgtataaaaacaaaagtggtaTTTGACAATTTTGTCCTTTGTGAATGTGAAAAAActattgaatttgtttattatgaatTTGGGTACTTTGgagttaaaaatagaaaaaataaactgttatcCAGACCAAAAATACGATTTTGCTAAGAGACCATTAAGAGATTCCCTTAGATATCAGAATCTTAAAAACGACAAACATAATGAAAGGAATTGGGTGAAAATCCTTAaagcattattataaataattatttttttgagtCTTGGGAAGAGTACTGCTATTCCTGAGGTTTTAATTCTTGTAGAATTGTTTCATTTCTCGGCGACTGTAACACACATCCTCCAGAGCGCAGTGTGGGGGCGGATGTGAACCGCACTGGGAATCCCTCGGCAGGGGGACAAGTCTGAACACCCGTCCCTGAGATCCGCGCACACGTGTGCATACCTCTGTGGACATCTGGGCTCCCAGCCCCGCCCTGCGCTTCACCTCCCTGCCCGGGTGTGTCGGGATATTCATTTTGCTTTGGTTATTACTGCACGGTGACTGAAATATCAGGGCCGATGCGTGTTGTTGACTGACAAGACTCCCCCAAAGCCTAAGATTTTCAGTTGTAGCCGAGTGCATCTGCCTTCATTAAACACGTCCTGTAGTCGACTGGTTAAAATGATATGTGGAGAAAAGATGGCCGTACTTTTTAATTAGTGTCTCGTTATGAACCAGACTGTTAGACCTGCTGTCTTCGGAAAGGGGGAGGTTTCAGATCGGACCTGAACCAATCTGCAGATCCTGCTGTTCTAGAAGCAGGACGACAGAACGCGCTGCTCTAGAAGACGCGGTTATTGAAAGCATGTTCTTTTAAGACAAATAGGCAGTTATAGATGTTAAGTCACATGTTTCAGAGCCATTGTGTCTAATGAGAGTTGTACACCATGTTTATGTTATGGAGGGCGTTGAAATCTGCCGTCAGTACGATACTTCCGAcgcatgtaataataataaacttggaAGTTTCGACATTAATAACCTCCCAAACGTGTCTCTGCTCTGATTATTTCTGGTCTGTGTCCATGGGTTTGTTCCGACACGTTTTATAGCGAAAATCACATTGAGTTTCAGAATAGATCCACTGATTTAGTCTCTCTTTGGGTAGA

Function

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174181 lncRNA upstream 1123 1088439 ~ 1088816 (+) True G138475
TU174084 lncRNA upstream 151444 938147 ~ 938495 (+) True G138399
TU174074 lncRNA upstream 178859 909387 ~ 911080 (+) True G138393
TU174055 lncRNA upstream 240266 843528 ~ 849673 (+) True G138385
TU174048 lncRNA upstream 248211 819326 ~ 841728 (+) False G138379
TU174210 lncRNA downstream 282628 1375707 ~ 1395263 (+) True G138502
TU174289 lncRNA downstream 845068 1938147 ~ 1939125 (+) True G138562
TU174333 lncRNA downstream 967298 2060377 ~ 2060604 (+) True G138593
TU174384 lncRNA downstream 1368559 2461638 ~ 2463636 (+) True G138634
TU174473 lncRNA downstream 1572379 2665458 ~ 2667538 (+) True G138712
AMCG00002753 mRNA upstream 80983 991584 ~ 1008956 (+) True AMCG00002753
AMCG00002748 mRNA upstream 159341 925231 ~ 930598 (+) False AMCG00002748
AMCG00002746 mRNA upstream 185585 899823 ~ 904354 (+) True AMCG00002746
AMCG00002747 mRNA upstream 196747 890675 ~ 893192 (+) True AMCG00002747
AMCG00002740 mRNA upstream 253776 829429 ~ 836163 (+) True AMCG00002740
AMCG00002760 mRNA downstream 10669 1103748 ~ 1107546 (+) True AMCG00002760
AMCG00002761 mRNA downstream 111739 1204818 ~ 1216164 (+) True AMCG00002761
AMCG00002759 mRNA downstream 157746 1250825 ~ 1265977 (+) True AMCG00002759
AMCG00002762 mRNA downstream 313532 1406611 ~ 1410058 (+) True AMCG00002762
AMCG00002763 mRNA downstream 336912 1429991 ~ 1436902 (+) True AMCG00002763
TU174083 other upstream 159341 926469 ~ 930598 (+) True AMCG00002748
TU174081 other upstream 162318 926469 ~ 927621 (+) False AMCG00002748
TU174076 other upstream 176407 911110 ~ 913532 (+) True G138394
TU174062 other upstream 191516 894828 ~ 898423 (+) True G138387
TU174182 other downstream 2860 1095939 ~ 1097475 (+) True G138476
TU174214 other downstream 308210 1401289 ~ 1402429 (+) True G138506
TU174215 other downstream 313967 1407046 ~ 1410088 (+) False AMCG00002762
TU174426 other downstream 1399007 2492086 ~ 2494594 (+) True AMCG00002784
TU174568 other downstream 2014379 3107458 ~ 3116081 (+) True G138790

Expression Profile