RNA id: AMCG00002760


Basic Information

Item Value
RNA id AMCG00002760
length 1322
RNA type mRNA
GC content 0.42
exon number 2
gene id AMCG00002760
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1103748 ~ 1107546 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCATGTTGAGAGCGGAGCGGGCTCGCCCGGCCCCGGCGCCTCCTCCCCGCACACTGGGGCGGCTGGGCAGCTAGGCCGCACTCGGAGTGCCGGAGGCCTCTGCCCGCGCCCGGCGCTAAAGTGCGGATCTTACCTGCCATGGCGTCCTCCGGGGGCAGATCTGGCCGCGCTGGGGGCTTGTCGGACCGTTACCCATGCTGCTTCCACAGAGGTGTGGGTGGTGATGGGAAATAATATCGAGCGGCCCTCCAGGAGCGAATTACATCATCAAGAGGACCCACATGTGTGCTGGAGCTGAATCACGACTCACAGTTCTTATAGTTGAGCTGTACAGCGAGTAGAAAGCCCTCTCAGTTACCCTGTGCTGATCTGGTTCATGCATGGGCTGCAGTGGTGATAATAATTAGATTAAAGAGGAAACTTGCATCTCTGGTTTGATAGACAGAGCCCACAATGCCACTGTGAAGGAATTGCCCAGATATTCGCCCCTTGGTGGACGGTGGGAGAacattgtattactgtattcaTATCATACAGTCAAGAAGCAAACTCTCTTGTTATTTAttagaaacatatatatttgttccacCACTACCTAGGTGGTATTGAAGAggaacaattaattattttatttttatgaaactaCTGACTTTTCCCAATTATTTTCTCTCACCTTACAATGCGTTGGCGCCCTCTTGTGTTATAATAAGGAAATACTGCATGTTTACCTCCCTGGCCATAATCCaattaaatacatcacaatTTCCCCTTTTTTCTAATGATAACAAAGGTGCTGAATGTATTCTTTGCCGTTGTTGTTGATATCGATTTAACTCGTTGACATTAGGTACTTAGAATAAGTGAAGACAAAAGCCTAGGTCTAGAGTTTAAAGTtgatcaaaaatgtattgtgtattatccATATGTATAGCCAGCATTTCAGTGAAACGTGCAAAACTatttgataacattttaaaatgattatgcttgtcaaattaatttacattgcttcttatgtttctttaaaacagaaataaataaataatgttgaaatTGAAACATCACCATTGTGATTGTTtctgcaaatgtatatatatatatttaatcgaAATGTTGAAAGTTAACTTTACAAGAGAAAGACAATGAGGTGCTTTCGTGGCAATGATCGGTCTTCTTAATCTCAATAAAAGGTGAGACATTATATTGAACTTTGCTGAACTTGGTCTGAAGCTGATAAATATAAGCAGATCCCAAGCATCAGGATGCACATCTTTTTGACTGGAATCCATCCAGGAACGCACCAAATAAATTCCAAGGAAC

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174181 lncRNA upstream 14932 1088439 ~ 1088816 (+) True G138475
TU174084 lncRNA upstream 165253 938147 ~ 938495 (+) True G138399
TU174074 lncRNA upstream 192668 909387 ~ 911080 (+) True G138393
TU174055 lncRNA upstream 254075 843528 ~ 849673 (+) True G138385
TU174047 lncRNA upstream 262020 837209 ~ 841728 (+) True G138379
TU174210 lncRNA downstream 268161 1375707 ~ 1395263 (+) True G138502
TU174289 lncRNA downstream 830601 1938147 ~ 1939125 (+) True G138562
TU174333 lncRNA downstream 952831 2060377 ~ 2060604 (+) True G138593
TU174384 lncRNA downstream 1354092 2461638 ~ 2463636 (+) True G138634
TU174473 lncRNA downstream 1557912 2665458 ~ 2667538 (+) True G138712
AMCG00002757 mRNA upstream 10669 1089939 ~ 1093079 (+) False AMCG00002757
AMCG00002753 mRNA upstream 94792 991584 ~ 1008956 (+) True AMCG00002753
AMCG00002748 mRNA upstream 173150 925231 ~ 930598 (+) False AMCG00002748
AMCG00002746 mRNA upstream 199394 899823 ~ 904354 (+) True AMCG00002746
AMCG00002747 mRNA upstream 210556 890675 ~ 893192 (+) True AMCG00002747
AMCG00002761 mRNA downstream 97272 1204818 ~ 1216164 (+) True AMCG00002761
AMCG00002759 mRNA downstream 143279 1250825 ~ 1265977 (+) True AMCG00002759
AMCG00002762 mRNA downstream 299065 1406611 ~ 1410058 (+) True AMCG00002762
AMCG00002763 mRNA downstream 322445 1429991 ~ 1436902 (+) True AMCG00002763
AMCG00002766 mRNA downstream 375470 1483016 ~ 1492755 (+) True AMCG00002766
TU174182 other upstream 6273 1095939 ~ 1097475 (+) True G138476
TU174180 other upstream 10796 1089278 ~ 1092952 (+) True AMCG00002757
TU174083 other upstream 173150 926469 ~ 930598 (+) True AMCG00002748
TU174081 other upstream 176127 926469 ~ 927621 (+) False AMCG00002748
TU174076 other upstream 190216 911110 ~ 913532 (+) True G138394
TU174214 other downstream 293743 1401289 ~ 1402429 (+) True G138506
TU174215 other downstream 299500 1407046 ~ 1410088 (+) False AMCG00002762
TU174426 other downstream 1384540 2492086 ~ 2494594 (+) True AMCG00002784
TU174568 other downstream 1999912 3107458 ~ 3116081 (+) True G138790
TU174694 other downstream 2321143 3428689 ~ 3596108 (+) True G138888

Expression Profile