RNA id: AMCG00002762


Basic Information

Item Value
RNA id AMCG00002762
length 1763
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00002762
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1406611 ~ 1410088 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTTTAAGAGTCTAACCTGATTAAGTAATCACTCGTAAATCACATGCATAATATTCACAAAATTAATAATCAcaagtgtatttaaaacacTGATATGATACACATGTTTGGGATATAGTGAAGGGGAGACATGAAAGGGTATAAAGAACAATCTCAAAGTAGATGTCGACGGGTAGGGAATTGCAGTATTTTGCCCCTCACAAATATGGCCGCGTTGCtgttgcgcagatctgcagaatcccgccgatcccattggtgcaaccgcgcagaactgcggacatctgcgccacACGACTGCGACCTGTAGTTTTACCGTGTGCGTCCTAGCGTCATGTGCTAAGCGTGCGATCTGATTGGTGGTTGTGCTCCCTGTACGTCTAATCTGATTGGTGGTTGTGCTTCCTGGGTGGCAGAAAGAGCTAATGAGAAAAGTCTCAAGGTTTGATGTGAGACTTTCAAAGGGCATGGGAACTTAAAACACAACAAGGAAGTGTACCTGAAGGATCAATCAAAGCGCTGTATACAATATATCTTAATAGacataaagtatatatattgtgtttgtttttgcataaaACCAATTAGCTGCTCAGTCGTGGGTATTTGGTGAAGATCGCTGCAAGTCCTGTATTAACCTGGGAGACACAATGGCAGTTTCCATGGATTGTGTGATTGCGGGTCAGAATAAACGGCGCCATGAGCTAGAGCTGGAAAACTGGCAGCATTTAAATCCAGCGAAGCGGTTTTGTGGCGCTTTGGGCAGATGTGAGCAGTTTGAAAATGGCGCTGTGGCTGAAAGCCCCATGGAGACCTGGGACCCACAGCAGCCAGGACTTCCACAGGATCCCTGTGTGAACAGCCCGGCGTCTCTCACTTTCACTGCCAGCCAGAGCCACGACATGAacactgtgtctcagtgtggtgGTTTAGCACAGCCCTGTGTACGATGCCTGGCTGGGGAGTCTGGTCATATTAACCACATCATGGGATTCTGACACTCTGGTGCAGTGGGGATACTGAAGACCTCTCAGTGCTTCAATGGAGGATATAGGATCCACAAGTGGAGTCTCTTCACTGCACTCACCGCTCAGTGCGTTTAACGTTTCAGTCACGAAATGATACTGAGCTAATACTAGaactgtcatttgtttttgaacTAACGGGCCAGTATTCAGAAGGGCTAGATGTCTACAGTACGTCCTCAGAACCGCGGATGCCTTAAAGGAAGGGAGCCAATAACATGCCATGTGTTACCATACTGTGTTGAGACCACTAATCCTACCAAGAAGTGTTGTGCCTTATTCTGTACAGCAGTGAATCACTTCAGTTTTGTtccttcattttgaaaaatacgATTTTATTTAGGACAAATATTGTGATGATATTTTTATACTTCATCCGTGTATAGATGTATATTTGAGTTAGAATCTACTTTTAATTATCTAAAAGTACAATTATTAATATGGCgttttagtatgttttttttttatgtgagtGGAAATCTCCTTTAATTTTTGTAAACCGAACTGCATACAACGTATGCTGGCCTTATTTAGCAAATTGATTAAACAATCTACAGCATAGTATTGTACCGGTTATGAAAATTGTTATATTGGAAGGATTTAATGATTTAGACTTTTTAATTCACAATCAACTGTTTAGGGATAAATAGGAGATTTGATGTTGGGAAATGTCAGATATCTGTATTGCGTTTTTATGTaaagtgaagttttttttttaccctagCAGTTTAACACTTGag

Function

GO:

id name namespace
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174210 lncRNA upstream 11348 1375707 ~ 1395263 (+) True G138502
TU174181 lncRNA upstream 317795 1088439 ~ 1088816 (+) True G138475
TU174084 lncRNA upstream 468116 938147 ~ 938495 (+) True G138399
TU174074 lncRNA upstream 495531 909387 ~ 911080 (+) True G138393
TU174055 lncRNA upstream 556938 843528 ~ 849673 (+) True G138385
TU174289 lncRNA downstream 528089 1938147 ~ 1939125 (+) True G138562
TU174333 lncRNA downstream 650319 2060377 ~ 2060604 (+) True G138593
TU174384 lncRNA downstream 1051580 2461638 ~ 2463636 (+) True G138634
TU174473 lncRNA downstream 1255400 2665458 ~ 2667538 (+) True G138712
TU174480 lncRNA downstream 1281371 2691429 ~ 2691840 (+) True G138719
AMCG00002759 mRNA upstream 140634 1250825 ~ 1265977 (+) True AMCG00002759
AMCG00002761 mRNA upstream 190447 1204818 ~ 1216164 (+) True AMCG00002761
AMCG00002760 mRNA upstream 299065 1103748 ~ 1107546 (+) True AMCG00002760
AMCG00002757 mRNA upstream 313532 1089939 ~ 1093079 (+) False AMCG00002757
AMCG00002753 mRNA upstream 397655 991584 ~ 1008956 (+) True AMCG00002753
AMCG00002763 mRNA downstream 19933 1429991 ~ 1436902 (+) True AMCG00002763
AMCG00002766 mRNA downstream 72958 1483016 ~ 1492755 (+) True AMCG00002766
AMCG00002765 mRNA downstream 94939 1504997 ~ 1513084 (+) True AMCG00002765
AMCG00002770 mRNA downstream 609180 2019238 ~ 2022826 (+) True AMCG00002770
AMCG00002774 mRNA downstream 823229 2233287 ~ 2240892 (+) True AMCG00002774
TU174214 other upstream 4182 1401289 ~ 1402429 (+) True G138506
TU174182 other upstream 309136 1095939 ~ 1097475 (+) True G138476
TU174180 other upstream 313659 1089278 ~ 1092952 (+) True AMCG00002757
TU174083 other upstream 476013 926469 ~ 930598 (+) True AMCG00002748
TU174081 other upstream 478990 926469 ~ 927621 (+) False AMCG00002748
TU174426 other downstream 1082028 2492086 ~ 2494594 (+) True AMCG00002784
TU174568 other downstream 1697400 3107458 ~ 3116081 (+) True G138790
TU174694 other downstream 2018631 3428689 ~ 3596108 (+) True G138888
TU174764 other downstream 2619466 4029524 ~ 4029924 (+) True G138941
TU175054 other downstream 3686673 5096731 ~ 5098744 (+) True G139176

Expression Profile