RNA id: AMCG00002766


Basic Information

Item Value
RNA id AMCG00002766
length 454
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00002766
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1483016 ~ 1492755 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attctttttaaaattcttCCTCAAGTGCAACCAGAACTGTTTGAAGAATGCCGGAAACCCACGAGACATGCGTAGATTCCAGGTTGTTGTATCGACGACAGTCAATGTGGATGGCCACGTCCTGGCCGTCTCGGACAACATGTTCGTACACAACAACTCCAAGCATGGGAGAAGGGCTCGGCGCCTTGACCCATCAGAAGCTACCCCGTGCATAAAAGCCATCAGCCCGAGCGAAGGATGGACCACAGGAGGAGCTACGGTCATCATCATCGGGGACAACTTCTTCGACGGCTTGCAAGTTGTGTTTGGCACCATGCTGGTGTGGAGTGAGCTGATAACTCCCCACGCCATCCGAGTGCAGACCCCGCCGCGGCACATTCCCGGCGTGGTGGAAGTCACCCTCTCGTACAAATCCAAGCAGTTCTGCAAAGGAGCTCCCGGGCGATTTGTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174210 lncRNA upstream 87753 1375707 ~ 1395263 (+) True G138502
TU174181 lncRNA upstream 394200 1088439 ~ 1088816 (+) True G138475
TU174084 lncRNA upstream 544521 938147 ~ 938495 (+) True G138399
TU174074 lncRNA upstream 571936 909387 ~ 911080 (+) True G138393
TU174055 lncRNA upstream 633343 843528 ~ 849673 (+) True G138385
TU174289 lncRNA downstream 445392 1938147 ~ 1939125 (+) True G138562
TU174333 lncRNA downstream 567622 2060377 ~ 2060604 (+) True G138593
TU174384 lncRNA downstream 968883 2461638 ~ 2463636 (+) True G138634
TU174473 lncRNA downstream 1172703 2665458 ~ 2667538 (+) True G138712
TU174480 lncRNA downstream 1198674 2691429 ~ 2691840 (+) True G138719
AMCG00002763 mRNA upstream 46114 1429991 ~ 1436902 (+) True AMCG00002763
AMCG00002762 mRNA upstream 72958 1406611 ~ 1410058 (+) True AMCG00002762
AMCG00002759 mRNA upstream 217039 1250825 ~ 1265977 (+) True AMCG00002759
AMCG00002761 mRNA upstream 266852 1204818 ~ 1216164 (+) True AMCG00002761
AMCG00002760 mRNA upstream 375470 1103748 ~ 1107546 (+) True AMCG00002760
AMCG00002765 mRNA downstream 12242 1504997 ~ 1513084 (+) True AMCG00002765
AMCG00002770 mRNA downstream 526483 2019238 ~ 2022826 (+) True AMCG00002770
AMCG00002774 mRNA downstream 740532 2233287 ~ 2240892 (+) True AMCG00002774
AMCG00002773 mRNA downstream 761274 2254029 ~ 2257547 (+) True AMCG00002773
AMCG00002776 mRNA downstream 857294 2350049 ~ 2374439 (+) True AMCG00002776
TU174215 other upstream 72928 1407046 ~ 1410088 (+) False AMCG00002762
TU174214 other upstream 80587 1401289 ~ 1402429 (+) True G138506
TU174182 other upstream 385541 1095939 ~ 1097475 (+) True G138476
TU174180 other upstream 390064 1089278 ~ 1092952 (+) True AMCG00002757
TU174083 other upstream 552418 926469 ~ 930598 (+) True AMCG00002748
TU174426 other downstream 999331 2492086 ~ 2494594 (+) True AMCG00002784
TU174568 other downstream 1614703 3107458 ~ 3116081 (+) True G138790
TU174694 other downstream 1935934 3428689 ~ 3596108 (+) True G138888
TU174764 other downstream 2536769 4029524 ~ 4029924 (+) True G138941
TU175054 other downstream 3603976 5096731 ~ 5098744 (+) True G139176

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059767 True 2904 mRNA 0.45 16 NC_007116.7 67390645 ~ 67439831 (+)